Sequence
atgc intronic sequence ATGC exonic sequence...cccatcttacacaaccatgcatgttttctatgttaatttcttaggatgaataattaaatgggattgacctaactatatactttgttggtttcatgtgtagGCACTATCCAATGGAAAATACAAGAGCTGTATACATAGGGCTGTGGTGAACATGGACAAAGAGAGAAGATCATTGACCTTCTTTATGAGCCCGAAAGACG
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110383966|gb|EC948375.1|EC948375EST: TCAAACCTCGACCCGGTGCCCTGGTGGTTAACATTGGTGACACTTTCATG GCACTATCCAATGGAAAATACAAGAGCTGTATACATAGGGCTGTGGTGAAC
genomic: TCAAACCTCGACCCGGTGCCCTGGTGGTTAACATTGGTGACACTTTCATGgtaggccttc ... tcatgtgtagGCACTATCCAATGGAAAATACAAGAGCTGTATACATAGGGCTGTGGTGAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgaataattaaatgggattgacctaactatatactttgttggtttcatgtgtagGCACTATCCAATGGAAAATACAAGAGCTGTATACATAGGGCTGTGGTGAACATGGACAAAGAGAGAAGATCATTGACCTTCTTTATGAGCCCGAAAGACG
acctaac putative branch site (score: 2)
taactatatacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cccatcttacacaaccatgcatgttttctatgttaatttcttaggatgaataattaaatgggattgacctaactatatactttgttggtttcatgtgtagGCACTATCCAATGGAAAATACAAGAGCTGTATACATAGGGCTGTGGTGAACATGGACAAAGAGAGAAGATCATTGACCTTCTTTATGAGCCCGAAAGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
cccatct
- - - - - acaacca
- - - - - - - - - gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - -aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acctaac