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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtccaattatttttactattattgaatggcatctggtggtagcggcatctattatgtttttcttttgtgtaacttgaggagcttggttttcactatgttctcttgatttctatgtcactttaattttgttgtagAGATTGTATGAGTTGGTTGTTCGCCATTTCTTGGCATGCGTTTCACAGCCAGCTGTAGGTGCTGAGACAATTGTTGAAATTGATATTGCCGGTGAATCAT

Basic information

species Vitis vinifera
transcript Vv04s0044g01570.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G16200.1 (Glycine max), 3'ss of exon 9
gtaagtccaattatttttactattattgaatggcatctggtggtagcggcatctattatgtttttcttttgtgtaacttgaggagcttggttttcactatgttctcttgatttctatgtcactttaattttgttgtagAGATTGTATGAGTTGGTTGTTCGCCATTTCTTGGCATGCGTTTCACAGCCAGCTGTAGGTGCTGAGACAATTGTTGAAATTGATATTGCCGGTGAATCAT
                                                   ||    ||| ||   |  |        |    |  |||  |||  || ||   |    |||  |   |  ||  ||||       ||| | |||||||| | ||||||||||| || |||||||| || ||| |||| ||| |||| ||||| || | |||||||||| ||||||| ||||||| ||
--------------------------------------------------gtcagacatgattccttactagtctttctacctatattgcattttgctttgacattcatattcat-catttctcaaatt--accacagAAACTGTATGAGCTTGTTGTTCGCCACTTTTTGGCATGTGTCTCAAAGCCTGCTTTAGGAGCTGAAACCACTGTTGAAATTAATATTGCTGGTGAATTAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcttggttttcactatgttctcttgatttctatgtcactttaattttgttgtagAGATTGTATGAGTTGGTTGTTCGCCATTTCTTGGCATGCGTTTCACAGCCAGCTGTAGGTGCTGAGACAATTGTTGAAATTGATATTGCCGGTGAATCAT
                                      ctttaat  putative branch site (score: 4)
                                            ttttgtt  CT-rich tract
                                       tttaattttgttgta  TA-rich tract