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...ctatttcaaaaacccatgttaaatggtaaggagactatatatttgttgctttattcagtttattttatttttctaaatgttgtgtatgcaattttaacagTGAAAACGGGCAAATGTGTGCGATAAAAGAAGTCAAGGTTGTTTCAGATGATCATACATCAAAAGAATGCCTTAAGCAACTGAACCAG
species | Vitis vinifera |
transcript | Vv04s0044g01290.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGCTTCTAGGAAGGGGGACTTTTGGGCATGTTTACGTTGGATTTAACAG TGAAAACGGGCAAATGTGTGCGATAAAAGAAGTCAAGGTTGTTTCAGATGAEST: gi|349830073|gb|FQ420333.1|FQ420333
genomic: AGGCTTCTAGGAAGGGGGACTTTTGGGCATGTTTACGTTGGATTTAACAGgtgatgatga ... attttaacagTGAAAACGGGCAAATGTGTGCGATAAAAGAAGTCAAGGTTGTTTCAGATGA
EST: AGGCTTCTAGGAAGGGGGACTTTTGGGCATGTTTACGTTGGATTTAACAG TGAAAACGGGCAAATGTGTGCGATAAAAGAAGTCAAGGTTGTTTCAGATGAEST: gi|161714297|gb|FC063543.1|FC063543
genomic: AGGCTTCTAGGAAGGGGGACTTTTGGGCATGTTTACGTTGGATTTAACAGgtgatgatga ... attttaacagTGAAAACGGGCAAATGTGTGCGATAAAAGAAGTCAAGGTTGTTTCAGATGA
EST: AGGCTTCTAGGAAGGAGGACTTTTGGGCATGTTTACGTTGGATTTAACAG TGAAAACGGGCAAATGTGTGCGATAAAAGAAGTCAAGGTTGTTTCAGATGAEST: gi|71863025|gb|DT012080.1|DT012080
genomic: AGGCTTCTAGGAAGGGGGACTTTTGGGCATGTTTACGTTGGATTTAACAGgtgatgatga ... attttaacagTGAAAACGGGCAAATGTGTGCGATAAAAGAAGTCAAGGTTGTTTCAGATGA
EST: AGGCTTCTAGGAAGGGGGACTTTTGGGCATGTTTACGTTGGATTTAACAG TGAAAACGGGCAAATGTGTGCGATAAAAGAAGTCAAGGTTGTTTCAGATGA
genomic: AGGCTTCTAGGAAGGGGGACTTTTGGGCATGTTTACGTTGGATTTAACAGgtgatgatga ... attttaacagTGAAAACGGGCAAATGTGTGCGATAAAAGAAGTCAAGGTTGTTTCAGATGA
ttgctttattcagtttattttatttttctaaatgttgtgtatgcaattttaacagTGAAAACGGGCAAATGTGTGCGATAAAAGAAGTCAAGGTTGTTTCAGATGATCATACATCAAAAGAATGCCTTAAGCAACTGAACCAG
ttctaaa putative branch site (score: 2)
ttattcagtttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatttcaaaaacccatgttaaatggtaaggagactatatatttgttgctttattcagtttattttatttttctaaatgttgtgtatgcaattttaacagTGAAAACGGGCAAATGTGTGCGATAAAAGAAGTCAAGGTTGTTTCAGATGATCATACATCAAAAGAATGCCTTAAGCAACTGAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - -aaaccca
- - - - - - - - - - - - - -aaggaga
- - - - - - - - - - - - - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgca