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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttctccatgccaatgttttgtagactgtaattacaaatctataatgtattactcaatatgcagagattcatatatagttgggttttcaatttgcagGGACAGACCCCTTTATTTCCTCGTATATTTGGTCATGAGGCTGGCGG

Basic information

species Vitis vinifera
transcript Vv04s0044g01120.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161715941|gb|FC068748.1|FC068748
EST:     TTCTCTTCACCTCCCTCTGCCACACTGATGTTTACTTCTGGGAAGCCAAG                         GGACAGACCCCTTTATTTCCTCGTATATTTGGTCATGAGGCTGGCGG
genomic: TTCTCTTCACCTCCCTCTGCCACACTGATGTTTACTTCTGGGAAGCCAAGgtaacttctc ... caatttgcagGGACAGACCCCTTTATTTCCTCGTATATTTGGTCATGAGGCTGGCGG
EST: gi|161717029|gb|FC069539.1|FC069539
EST:     TTCTCTTCACCTCCCTCTGCCACACTGATGTTTACTTCTGGGAAGCCAAG                         GGACAGACCCCTTTATTTCCTCGTATATTTGGTCATGAGGCTGGCGG
genomic: TTCTCTTCACCTCCCTCTGCCACACTGATGTTTACTTCTGGGAAGCCAAGgtaacttctc ... caatttgcagGGACAGACCCCTTTATTTCCTCGTATATTTGGTCATGAGGCTGGCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgtattactcaatatgcagagattcatatatagttgggttttcaatttgcagGGACAGACCCCTTTATTTCCTCGTATATTTGGTCATGAGGCTGGCGG
                                         ttttc  CT-rich tract
                        attcatatatagtt  TA-rich tract