Sequence
atgc intronic sequence ATGC exonic sequencegtaagtataataagattcaaatgttacatcttcctatttcagtatttttcgtacttgtttttgttttcatgactatttgaaatggttccttatgtgaagactggaatataatttggtttcctttttggatgtaaccagTGACATGCATTCAGTTCAATCCTGTTGATGACAATTATTTCATAAGCGGTTCCATAGATGGAAAAGTTCGAATTTGGGGAGTGTCAGAGAGGCGAGTTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0044g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os04g34080.1 (Oryza sativa), 3'ss of exon 3
gtaagtataataagattcaaatgttacatcttcctatttcagtatttttcgtacttgtttttgttttcatgactatttgaaatggttccttatgtgaagactggaatataatttggtttcctttttggatgtaaccagTGACATGCATTCAGTTCAATCCTGTTGATGACAATTATTTCATAAGCGGTTCCATAGATGGAAAAGTTCGAATTTGGGGAGTGTCAGAGAGGCGAGTTGT
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-----------------------------------gattatatccttattgcgatgaaagacagtcttataa---tgttatatgtactttgggctattgcattgactttttttttcattcctttgaaattgttaacagTGACATGTGTTCAATTCAATCCTATCGATGAAAGATACTTCATCAGTGGTTCAATAGATGGAAAAGTTCGTGTTTGGGATGCTTTGGATAAGAGAGTAGT
upper sequence: Vv04s0044g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G048800_T01 (Zea mays), 3'ss of exon 3
gtaagtataataagattcaaatgttacatcttcctatttcagtatttttcgtacttgtttttgttttcatgacta-tttgaaatggttccttatgtgaagactggaatataatttggtttcctttttggatgtaaccagTGACATGCATTCAGTTCAATCCTGTTGATGACAATTATTTCATAAGCGGTTCCATAGATGGAAAAGTTCGAATTTGGGGAGTGTCAGAGAGGCGAGTTGT
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------------------------------------ctacgtccctgtctgtaccaggcttggtcaacggctctagtctgaaacatttcataatttgga-actg--atgttttcttattcatgatgaacctgccaacagTAACATGCATTCAGTTCAATCCTGTTGACGAAGGATACTTTGTTAGCGGCTCAATAGACGGTAAAGTCCGTGTCTGGGATGTTTCAGAGAGGCGAGTAGT
upper sequence: Vv04s0044g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G15600.1 (Glycine max), 3'ss of exon 2
-----------------------gtaagtata-ataagattcaaatgttacatcttcctatttcagtatttttcgtacttgtt--tttgttttcatgactat---ttgaaa-----tggttccttatgtgaagactggaat--ataatt-tggtttcctttttggatgtaaccagTGACATGCATTCAGTTCAATCCTGTTGATGACAATTATTTCATAAGCGGTTCCATAGATGGAAAAGTTCGAATTTGGGGAGTGTCAGAGAGGCGAGTTGT
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gtatgtataacagaaccatgccttttggcgcatattgttctcaaccatagtttaattagttgacaaaatttaaagcacatctttgtttatgttcataatcataatttgaaacattataatatcttttcccgtgaatgtaatttataattgtgtcttcactttttaatgaaagcagTGACATGCATTCAGTTCAACCCTGTTGATGAAAATTACTTCATTAGTGGGTCCATTGATGGTAAGGTTCGAATATGGGGGATACGTGAAGAGCGAGTTAT
upper sequence: Vv04s0044g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G39290.1 (Glycine max), 3'ss of exon 3
gtaagtataataagattcaaatgttacatcttcctatttcagtatttttcgtacttgtttttgttttcatgactatttgaaatggttccttatgtgaagactggaata-taatttggtttcctttttggatgtaaccagTGACATGCATTCAGTTCAATCCTGTTGATGACAATTATTTCATAAGCGGTTCCATAGATGGAAAAGTTCGAATTTGGGGAGTGTCAGAGAGGCGAGTTGT
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---------gtaagtattatttacaacatatgccttgttca----ttttcttactttgctagaat---gtgaaatattgcaata--tctttatcaaacaagcataataataattctgtcttgttttcacatggaaacagTGACTTGTATTCAATTCAATCCCGTTGATGAAAATTACTTCATCAGTGGTTCCATAGATGGCAAAGTTCGAATATGGGGGATACATGAAGAACGAGTTGT
upper sequence: Vv04s0044g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G15640.1 (Glycine max), 3'ss of exon 3
gtaagtataataagattcaaatgttacatcttcctatttcagtatttttcgtacttgtttttgttttcatgactatttgaaatggttccttatgtgaagactggaata-taatttggtttcctttttggatgtaaccagTGACATGCATTCAGTTCAATCCTGTTGATGACAATTATTTCATAAGCGGTTCCATAGATGGAAAAGTTCGAATTTGGGGAGTGTCAGAGAGGCGAGTTGT
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---------gtaagtattatttacaacatatgctttgttca----ttttcatactttgctagaat---gtgaaatattgcaata--tctttatcaaacaagtataataataattctgtctttttttcacatggaaacagTGACTTGTATTCAATTCAACCCTGTTGATGAAAATTACTTCATCAGTGGTTCCATAGACGGCAAAGTCCGAATATGGGGGATACATGAAGAACGAGTTGT
upper sequence: Vv04s0044g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G32330.1 (Glycine max), 3'ss of exon 4
gtaagtataataagattca--aatgttacatcttcctatttcagtatttttcgtacttgtttttgttttcatgactatttgaa-atggttccttatgtgaagactggaatataatttggtttcctttttggatgtaaccagTGACATGCATTCAGTTCAATCCTGTTGATGACAATTATTTCATAAGCGGTTCCATAGATGGAAAAGTTCGAATTTGGGGAGTGTCAGAGAGGCGAGTTGT
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gtatgtataacagaaccaggcattttgacgcatattgttctcaaccatagtttaattagttaacaaaacttaaagcacatgactatatcttttcccgtgaatg-taatttataatagtgtcttcacttttaatgaaagcagTGACATGCATTCAATTCAACCCTGTTGATGAAAACTACTTCATTAGTGGGTCCATTGATGGTAAGGTTCGAATATGGGGGATACGTGAAGAGCGAGTTAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggttccttatgtgaagactggaatataatttggtttcctttttggatgtaaccagTGACATGCATTCAGTTCAATCCTGTTGATGACAATTATTTCATAAGCGGTTCCATAGATGGAAAAGTTCGAATTTGGGGAGTGTCAGAGAGGCGAGTTGT
aatataatttggttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtataataagattcaaatgttacatcttcctatttcagtatttttcgtacttgtttttgttttcatgactatttgaaatggttccttatgtgaagactggaatataatttggtttcctttttggatgtaaccagTGACATGCATTCAGTTCAATCCTGTTGATGACAATTATTTCATAAGCGGTTCCATAGATGGAAAAGTTCGAATTTGGGGAGTGTCAGAGAGGCGAGTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG