1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaattatccatcaattttgtgtttcaagagtttttcctttcttatttttttcttcctaaatttttattctgatcggaatattgcagGAGACTGATATCGGAAGGCATGTGAATCGATTGCGGAAGCATCCATCTAACGATGTGCGGAGATTGGTAAAGCATCTTGTCAG
species | Vitis vinifera |
transcript | Vv04s0044g00280.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTTGTTGCAAACTCTGGCCGACATGGACATAACCTTCAAAGCTCTCAAG GAGACTGATATCGGAEST: gi|110372365|gb|EC936523.1|EC936523
genomic: ATTTGTTGCAAACTCTGGCCGACATGGACATAACCTTCAAAGCTCTCAAGgtaaattatc ... aatattgcagGAGACTGATATCGGA
EST: ATTTGTTGCAAACTCTGGCCGACATGGACATAACCTTCAAAGCTCTCAAG GAGACTGATATCGGAAGGCATGTGAATCGATTGCGGAAGCATCCATCTAACEST: gi|161720967|gb|FC070347.1|FC070347
genomic: ATTTGTTGCAAACTCTGGCCGACATGGACATAACCTTCAAAGCTCTCAAGgtaaattatc ... aatattgcagGAGACTGATATCGGAAGGCATGTGAATCGATTGCGGAAGCATCCATCTAAC
EST: ATTTGTTGCAAACTCTGGCCGACATGGACATAACCTTCAAAGCTCTCAAG GAGACTGATATCGGAAGGCATGTGAATCGATTGCGGAAGCATCCATCTAAC
genomic: ATTTGTTGCAAACTCTGGCCGACATGGACATAACCTTCAAAGCTCTCAAGgtaaattatc ... aatattgcagGAGACTGATATCGGAAGGCATGTGAATCGATTGCGGAAGCATCCATCTAAC
ttttcctttcttatttttttcttcctaaatttttattctgatcggaatattgcagGAGACTGATATCGGAAGGCATGTGAATCGATTGCGGAAGCATCCATCTAACGATGTGCGGAGATTGGTAAAGCATCTTGTCAG
tttcttatttttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattatccatcaattttgtgtttcaagagtttttcctttcttatttttttcttcctaaatttttattctgatcggaatattgcagGAGACTGATATCGGAAGGCATGTGAATCGATTGCGGAAGCATCCATCTAACGATGTGCGGAGATTGGTAAAGCATCTTGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT