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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atatgatcagaaatgcccttattatagaaaatttcaatatataatcagaaatgccattttttaagcacaaactaagagttttgcacacttttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTCAAAGAGAACGCATTCCAGAACGTGTGGTCCATGCTAGAGGAGCTAGTGC

Basic information

species Vitis vinifera
transcript Vv04s0044g00020.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71857558|gb|DT006613.1|DT006613
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|161720176|gb|FC065491.1|FC065491
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|110386867|gb|EC951499.1|EC951499
EST:     TGGTGCGCCTGTTTATAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|161721542|gb|FC070090.1|FC070090
EST:     TGGTGCGCCTGTTTATAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|161721753|gb|FC070141.1|FC070141
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|33405247|gb|CF210874.1|CF210874
EST:     TGGTGCGCCTGTTTATAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|71857940|gb|DT006995.1|DT006995
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|71855564|gb|DT004619.1|DT004619
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|161705783|gb|FC056654.1|FC056654
EST:     GTGCGCCTGTTTACAACAATGACTCGTCGCTCACCCGTTGGATTCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTT
genomic: GTGCGCCTGTTTACAACAATGACTCGTCGCTCACC-GTTGGAT-CAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTT
EST: gi|161718659|gb|FC068229.1|FC068229
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|110386803|gb|EC951430.1|EC951430
EST:     TCGCTCACCG-TGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGT-GAGAAGCTTGCAAA-TTTC
genomic: TCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|161709598|gb|FC061012.1|FC061012
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|30132155|gb|CB917494.1|CB917494
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|38516623|gb|CF983798.1|CF983798
EST:     TGGTGCGCCTGTTTATAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|161709418|gb|FC059287.1|FC059287
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|161708145|gb|FC055734.1|FC055734
EST:     TGGTGCGCCTGTTTATAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|161707629|gb|FC056897.1|FC056897
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|37185494|gb|CF604847.1|CF604847
EST:     TGGTGCGCCTGTTTATAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|110708284|gb|EE085653.1|EE085653
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|161708317|gb|FC057476.1|FC057476
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|110389453|gb|EC954291.1|EC954291
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|33409704|gb|CF215331.1|CF215331
EST:     TGGTGCGCCTGTTTATAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|18458343|gb|BM436621.1|BM436621
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|110700309|gb|EE078201.1|EE078201
EST:     TGGTGCGCCTGTTTATAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|110709523|gb|EE085060.1|EE085060
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|351031182|gb|FQ445009.1|FQ445009
EST:     TGGTGCGCCTGTTTTTAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|110724226|gb|EE099868.1|EE099868
EST:     TGGTGCGCCTGTTTATAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|351055902|gb|FQ453363.1|FQ453363
EST:     TGGTGCGCCTGTTTATAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|27586344|gb|CB009039.1|CB009039
EST:     TGGTGCGCCTGTTTAC-ACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|161714575|gb|FC063559.1|FC063559
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|71855339|gb|DT004394.1|DT004394
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|110722482|gb|EE098761.1|EE098761
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|161711429|gb|FC061194.1|FC061194
EST:     T-GTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|161709806|gb|FC058892.1|FC058892
EST:     TGGTGCGCCTGTTTATAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|161718646|gb|FC068222.1|FC068222
EST:     TGGTGCGCCTGTTTATAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|37188850|gb|CF608199.1|CF608199
EST:     TGGTGCGCCTGTTTATAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|161717365|gb|FC067534.1|FC067534
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|110723411|gb|EE100689.1|EE100689
EST:     TGGTGCGCCTGTTTATAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|161712098|gb|FC061470.1|FC061470
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|161721210|gb|FC070716.1|FC070716
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|71856446|gb|DT005501.1|DT005501
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTCGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|110722435|gb|EE098665.1|EE098665
EST:     TGGTGCGCCTGTTTATAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|110685043|gb|EE063014.1|EE063014
EST:     TGGTGCGCCTGTTTATAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
EST: gi|161714724|gb|FC062679.1|FC062679
EST:     TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAG                         GCCCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC
genomic: TGGTGCGCCTGTTTACAACAATGACTCGTCGCTCACCGTTGGATCAAGAGgtatagttgt ... ttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagaaatgccattttttaagcacaaactaagagttttgcacacttttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTCAAAGAGAACGCATTCCAGAACGTGTGGTCCATGCTAGAGGAGCTAGTGC
                                        cactttttttt  CT-rich tract
                                         actttttttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atatgatcagaaatgcccttattatagaaaatttcaatatataatcagaaatgccattttttaagcacaaactaagagttttgcacacttttttttacagGACCAGTTCTTCTTGAGGATTATCATTTGGTGGAGAAGCTTGCAAATTTTCAAAGAGAACGCATTCCAGAACGTGTGGTCCATGCTAGAGGAGCTAGTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT