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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaactctctttctcaatcgtaaatgcatatgtaaattgttttttttttttttccggtattggattttgacgtttgtttttggatttttagGCGAAGGCGGATGCTTCTGTGACCTCAACTGCATCTAAACCTGG

Basic information

species Vitis vinifera
transcript Vv04s0043g00720.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110701493|gb|EE079129.1|EE079129
EST:     CTTCCCCGCGGAGCCGCGGTGCTCAACGCTTGATTACTAATGCAGTTGCA                         GCGAAGGCGGATGCTTCTGTGACCTCAACTGCATCTAAACCTGG
genomic: CTTCCCCGCGGAGCCGCGGTGCTCAACGCTTGATTACTAATGCAGTTGCAgttaactctc ... ggatttttagGCGAAGGCGGATGCTTCTGTGACCTCAACTGCATCTAAACCTGG
EST: gi|110730292|gb|EE107208.1|EE107208
EST:     CTTCCCCGCGGAGCCGCGGTGCTCAACGCTTGATTACTAATGCAGTTGCA                         GCGAAGGCGGATGCTTCTGTGACCTCAACTGCATCTAAACCTGG
genomic: CTTCCCCGCGGAGCCGCGGTGCTCAACGCTTGATTACTAATGCAGTTGCAgttaactctc ... ggatttttagGCGAAGGCGGATGCTTCTGTGACCTCAACTGCATCTAAACCTGG
EST: gi|110376240|gb|EC941289.1|EC941289
EST:     CTTCCCCGCGAAGCCGCGGTGCTCAACGCTTGATTACTAATGCAGTTGCA                         GCGAAGGCGGATGCTTCTGTGACCTCAACTGCATCTAAACCTGG
genomic: CTTCCCCGCGGAGCCGCGGTGCTCAACGCTTGATTACTAATGCAGTTGCAgttaactctc ... ggatttttagGCGAAGGCGGATGCTTCTGTGACCTCAACTGCATCTAAACCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttttttttttttttccggtattggattttgacgtttgtttttggatttttagGCGAAGGCGGATGCTTCTGTGACCTCAACTGCATCTAAACCTGG
                            ttttgac  putative branch site (score: 3)
                                                ttttt  putative PPT
     tttttttttttt  TA-rich tract