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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggttcttggaactaatcactttttttttttatttgataggtaactaatcacttaatatgaacagacattatatgtgaagctttattgacatctcataaacagatgttattgtgcatgggatctattatgattctattccttttaaatttctttgtgaaaattctgatcttgttatcatatttggttgcagATCCTAATGATCATAAAAGGGTTGTTTAGAAGATATGAAAGATGGAATCCTGTGCATCCAACATCCGGAGCCTTTTGGGGCATGGGGATAGGCATTGGTT

Basic information

species Vitis vinifera
transcript Vv04s0043g00140.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0043g00140.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G17640.2 (Glycine max), 3'ss of exon 1
gtatggttcttggaactaatcactttttttttttatttgataggtaactaatcacttaatatgaacagacattatatgtgaagctttattgacatctcataaacagatgttattgtgcatgggat-ctattatgattctattccttttaaatttctttgtgaaaattctgatcttgttatcatatttggttgcagATCCTAATGATCATAAAAGGGTTGTTTAGAAGATATGAAAGATGGAATCCTGTGCATCCAACATCCGGAGCCTTTTGGGGCATGGGGATAGGCATTGGTT
                                                                                    | |  |||  |       | | |||||  ||  |||||  | ||| | |  | |   |      |||  | ||| |     ||  ||| ||    || |||||  |  ||| | |||||||| |||||||| |||||| |||| || ||||||||||| ||||| ||||||||    |||||||||||||| |||||  | ||| ||||||
------------------------------------------------------------------------------------tatgctgaagtgatg---ataaatgtt--tgatcatggtttgctagtttactacaggtttaaacaaacattttttttgtttttgagatttt----tcttattt--tctcagGTTCTAATGATTATAAAAGGATTGTTTGGAAGGTACGAAAGATGGAACCCTGTTCATCCAACTCATGGAGCCTTTTGGGGAATGGGTGTGGGCGTTGGTT

upper sequence: Vv04s0043g00140.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G17640.1 (Glycine max), 3'ss of exon 1
gtatggttcttggaactaatcactttttttttttatttgataggtaactaatcacttaatatgaacagacattatatgtgaagctttattgacatctcataaacagatgttattgtgcatgggat-ctattatgattctattccttttaaatttctttgtgaaaattctgatcttgttatcatatttggttgcagATCCTAATGATCATAAAAGGGTTGTTTAGAAGATATGAAAGATGGAATCCTGTGCATCCAACATCCGGAGCCTTTTGGGGCATGGGGATAGGCATTGGTT
                                                                 |   |||  |        || |  |||  |       | | |||||  ||  |||||  | ||| | |  | |   |      |||  | ||| |     ||  ||| ||    || |||||  |  ||| | |||||||| |||||||| |||||| |||| || ||||||||||| ||||| ||||||||    ||||||||||||||                    
-----------------------------------------------------------------cgtgcatgctgctcaccactatgctgaagtgatg---ataaatgtt--tgatcatggtttgctagtttactacaggtttaaacaaacattttttttgtttttgagATTTT----TCTTATTT--TCTCAGGTTCTAATGATTATAAAAGGATTGTTTGGAAGGTACGAAAGATGGAACCCTGTTCATCCAACTCATGGAGCCTTTTGGGGA-------------------

upper sequence: Vv04s0043g00140.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G19070.1 (Arabidopsis thaliana), 3'ss of exon 1
gtatggttcttggaactaatcactttttttttttatttgataggtaactaatcacttaatatgaacagacattatatgtgaagctttattgacatctcataaacagatgttattgtgca-tgggatctattatgattctattccttttaaatttctttgtgaaaattctgatcttgttatcatatttggttgcagATCCTAATGATCATAAAAGGGTTGTTTAGAAGATATGAAAGATGGAATCCTGTGCATCCAACATCCGGAGCCTTTTGGGGCATGGGGATAGGCATTGGTT
                                                                                 |  |  ||||  || | ||  |    | | | || | | ||  |  || | |  ||   |   | | || ||  |  ||     |||  |||||  || || ||||   ||||| || | |||||||| |||||  | ||| | |||||||||| |||||||||||||||||| || |  ||||| |||||||| |||||||| || |||||||
---------------------------------------------------------------------------------atgtgcattgg-atttgattta---gtttcagtgggtactgaaagataatttagttgggtcaatgtaaacttattccgtt----ttcaaatctt--tacca-attt---tgcagGTCTTGATGATCATTAAAGGTATATTTCGGAGATATGAAAAATGGAATCCTGTGCATCCTACTTATGGAGCATTTTGGGGAATGGGGATTGGGATTGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccttttaaatttctttgtgaaaattctgatcttgttatcatatttggttgcagATCCTAATGATCATAAAAGGGTTGTTTAGAAGATATGAAAGATGGAATCCTGTGCATCCAACATCCGGAGCCTTTTGGGGCATGGGGATAGGCATTGGTT
                         ttctgat  putative branch site (score: 3)
     tttaaatttctttgtg  TA-rich tract