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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcctgtcctttcgaaattccttatcacttgtttgtatctggctatttaagattattgagtactgatttttgtcttttggaaattcgattcgacagAGATGCGGGAGATTGGATGATCAAATTGCACTTTTGAGGCACAAATTGTTCTTGATTCAACAAGGGATGGCTTTCAATGGGAAGCGCACCAAGACTGCCA

Basic information

species Vitis vinifera
transcript Vv04s0023g03740.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03740.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G05170.1 (Glycine max), 3'ss of exon 2
------------------------------------gtcctgtcctttcgaaa--ttccttatcacttgtttgtatctggcta---tttaagattat-tgagtactgatttttgtcttttggaaattcgattcgacagAGATGCGGGAGATTGGATGATCAAATTGCACTTTTGAGGCACAAATTGTTCTTGATTCAACAAGGGATGGCTTTCAATGGGAAGCGCACCAAGACTGCCA
                                     |  | |   | | |||  ||  ||    ||||||  | |    |||     |||  |||| | | ||  |||  |        | |  ||   ||  ||||||||| |||||| | |||||||||||||  ||  ||| |||||| |||| |||||||||||||||  ||||||||||||| ||||| || |||||||| |
gtaataggtcacttttcactttccaaatttcatgctattttatttatacaaaaacttattttgttcttgttgttgttgtactaaaacctaaacttatatcattagcgatactgaaaaaaagcactttt--tttaacagAGATGTGGGAGACTTGATGATCAAATTGGTCTACTGAAGCACAAGTTGTACTTGATTCAACAAGGATTGGCTTTCAATGGAAAGCGAACAAAGACTGCAA

upper sequence: Vv04s0023g03740.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G23380.1 (Glycine max), 3'ss of exon 2
--gtcctgtcctttcgaaattccttat-cacttgtttgtatctggctatttaaga-ttat-tgagtactgatttttgtcttttggaaattcgattcgacagAGATGCGGGAGATTGGATGATCAAATTGCACTTTTGAGGCACAAATTGTTCTTGATTCAACAAGGGATGGCTTTCAATGGGAAGCGCACCAAGACTGCCA
    | | |  | |   | |  |||||    |||||  |   |    |  ||  | |||| | | ||  |||  |   |      | | | | ||  |||||| || |||||| | ||||| |||||||| || |||| |||||| ||||  ||||||||||||||  ||||||||||||| ||| | || ||||||||||
aaaacttatattatatcactaacttatgttgttgttgttgaataaaaacctagaacttatatcactagcgatactgaacaaa-aaacacttgttttaacagAGGTGTGGGAGACTTGATGACCAAATTGCTCTATTGAAGCACAAGTTGTATTTGATTCAACAAGGTTTGGCTTTCAATGGCAAGAGAACAAAGACTGCCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctatttaagattattgagtactgatttttgtcttttggaaattcgattcgacagAGATGCGGGAGATTGGATGATCAAATTGCACTTTTGAGGCACAAATTGTTCTTGATTCAACAAGGGATGGCTTTCAATGGGAAGCGCACCAAGACTGCCA
                   tactgat  putative branch site (score: 2)
     ttaagattatt  TA-rich tract