Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggggtagcgagttgagtgatttggtatgatggtttgtacatttgtatatcttgatttcagaagcataacttttggcatgtgttatcttattacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAGCATGGTCTGCGGCAACTTGATGAGGCTGAAATTGATGCCATTGTTGCTG

Basic information

species Vitis vinifera
transcript Vv04s0023g03690.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03690.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os09g36710.1 (Oryza sativa), 3'ss of exon 2
tggggtag--cgagttgagtgatttggtatgatggtttgt-acatttgtatatcttgatttcagaagcataacttttggcatgtgttatcttattacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAGCATGGTCTGCGGCAACTTGATGAGGCTGAAATTGATGCCATTGTTGCTG
||   | |  | |    | |    | ||||| |  || ||  ||||| | ||  ||| |||    |    || |  || |  |   |  | ||        |||| ||||||||||| ||||||||||| || ||||| ||||||||   | || ||||||| || ||||| || ||||||||||| || |    ||||||||
tgtctttggcctatgccactacgctagtatggtatttggttgcatttatttagattgtttttgtcaa-gcaattactgac--gaactgacataaattgcacagGTTGTTGAGAGTGGCGGAAAGAACATCGAGATTGCAGTGATGACACAGAAGGATGGTCTTCGCCAACTCGAGGAGGCTGAAATCGACGAATATGTTGCTG

upper sequence: Vv04s0023g03690.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G050467_T01 (Zea mays), 3'ss of exon 2
tggggtagcg-agttgagtgatttggt--atgatggtttgtacatttgtatatcttgatttcagaagcataacttttggcatgtgttatc---ttattacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAGCATGGTCTGCGGCAACTTGATGAGGCTGAAATTGATGCCATTGTTGCTG
      |||  | ||   |  |||  |  |  ||  || |  || ||||     ||||      ||   ||  |  |||||    ||  |    ||| |  | ||||| ||||||||||| || ||||||||||| ||||| ||||||||    ||| | || || |   |||| || |||||||| |||||||    |||||| |
------agcttactttctttttttaatgaactatttttggctcaattgttctgattgaaccttcaactgtatttggtggcaatgattgaccatctataatctctagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAGGACGGCCTTCATGAACTCGAAGAGGCTGAGATTGATGAGTATGTTGCCG

upper sequence: Vv04s0023g03690.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G23580.1 (Glycine max), 3'ss of exon 2
tggggtagcgagttgagtgatt-tggtatgatggtttgtacatttgtatatcttg-atttcagaagcataacttttggcatgtgttatctta----ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAGCATGGTCTGCGGCAACTTGATGAGGCTGAAATTGATGCCATTGTTGCTG
        |  ||||  | |||   ||||    |||||   | | |  | |  ||  | |||  || |  |  |||   ||   | |  ||     ||  |  ||||| |||||||||||||| |||||||||||| |||| |||||||| | |||||| |||||||| ||||| || || || |||||||||||||| |||||||
-----attcctgttgcataattacagtatttctgtttgc-taatagcttgttatgcgtctcaacaggaatatgtttaatatacttcacttttgactttttaattagGTTGTTGAGAGTGGAGGGAAGAACATAGAAGTTGCGGTGATGACTAAGGAGCAGGGTCTGCGTCAACTGGAGGAAGCCGAAATTGATGCCATCGTTGCTG

upper sequence: Vv04s0023g03690.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G05190.1 (Glycine max), 3'ss of exon 2
tggggtagcgagttgagtgatttggtatgatggtttgtacatttgtatatcttgatttcagaagcataacttttggcatgtgttatcttattacatgta----gGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAGCATGGTCTGCGGCAACTTGATGAGGCTGAAATTGATGCCATTGTTGCTG
    | ||  | ||  ||    |  ||  ||| | ||||  |         ||  ||| | |    | | ||||| | | | || |   || | |||||    ||| || ||||| ||||| |||||||||||| ||||||||||||| | ||||||||||||||  ||||| || || ||||||||||||||||| |||||||
--ttgcagt-atttctgtttgctaatagcatgttatgtatttgcaacaggatttgtttgatatattttatttttgacttttatt-tgccatcatatgtaattagGTTGTGGAGAGCGGAGGCAAGAACATAGAAGTTGCTGTGATGACTAAGGAGCATGGTCTGCATCAACTGGAGGAAGCTGAAATTGATGCCATCGTTGCTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28958964|gb|CB339480.1|CB339480
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|110713978|gb|EE090372.1|EE090372
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACCAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|110373492|gb|EC937734.1|EC937734
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|30329037|gb|CD012299.1|CD012299
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|110727857|gb|EE105096.1|EE105096
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAAAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|33405968|gb|CF211595.1|CF211595
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|110388333|gb|EC953069.1|EC953069
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|110686030|gb|EE063266.1|EE063266
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|71890512|gb|DT039567.1|DT039567
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|110724303|gb|EE100015.1|EE100015
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGGTGAGAGTGGANGAAAGA-CATANAAATTGCTGTGATGACGAAGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|110709943|gb|EE085844.1|EE085844
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAAGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|110388319|gb|EC953054.1|EC953054
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|27582315|gb|CB005010.1|CB005010
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|110732837|gb|EE108475.1|EE108475
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGANGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|22007960|gb|BQ792994.1|BQ792994
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|34545425|gb|CF513657.1|CF513657
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|110415739|gb|EC981671.1|EC981671
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|110708913|gb|EE083912.1|EE083912
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|110394228|gb|EC959581.1|EC959581
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|71868881|gb|DT017936.1|DT017936
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|110388909|gb|EC953710.1|EC953710
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|34549020|gb|CF517252.1|CF517252
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|26262557|gb|CA813620.1|CA813620
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|110368556|gb|EC932538.1|EC932538
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|34545512|gb|CF513744.1|CF513744
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|110689049|gb|EE064931.1|EE064931
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACCTAGAAATTGCTGTGATGACCAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|110360939|gb|EC924384.1|EC924384
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|33406060|gb|CF211687.1|CF211687
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|110413863|gb|EC979677.1|EC979677
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|110403011|gb|EC964033.1|EC964033
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|28959445|gb|CB339723.1|CB339723
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|110381428|gb|EC934430.1|EC934430
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|32456779|gb|CD797953.1|CD797953
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGACGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|110387559|gb|EC952239.1|EC952239
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
EST: gi|110390897|gb|EC955840.1|EC955840
EST:     AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAA                         GTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG
genomic: AAACTTCCGGGCAAGAAACTGTGAAGCTTGCAATTCGTGCATTGCTTGAAgtgagtggct ... ttacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatcttgatttcagaagcataacttttggcatgtgttatcttattacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAGCATGGTCTGCGGCAACTTGATGAGGCTGAAATTGATGCCATTGTTGCTG
                  gcataac  putative branch site (score: 3)
                                        tcttatt  putative PPT
                                     ttatcttattacat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tggggtagcgagttgagtgatttggtatgatggtttgtacatttgtatatcttgatttcagaagcataacttttggcatgtgttatcttattacatgtagGTGGTTGAGAGTGGAGGAAAGAACATAGAAATTGCTGTGATGACGAGGGAGCATGGTCTGCGGCAACTTGATGAGGCTGAAATTGATGCCATTGTTGCTG

- - - - - - - - - - - -ggtatga
- - - - - - - - - - - - - - - tggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgtg