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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgattacttagccattcttctgttaaaattgttattcctcaatattttctggtctgttgggcaatagtgttcattaacattttgattctgactctgagcagCTGTATGAAGTGATGAGGGATGTAACATGGGCACTATTTGCAAGCCGTAAAGCTCTCAATGCGATAACCATAAACTACAGGAACGGTTTTGTCCAGGCTT

Basic information

species Vitis vinifera
transcript Vv04s0023g03680.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G08310.1 (Glycine max), 3'ss of exon 2
-----gttgattacttagccattcttctgttaaaattgttattcctcaatattttctggtctgttgggcaatagtgt-tcattaacattttg-attctgactctgagcagCTGTATGAAGTGATGAGGGATGTAACATGGGCACTATTTGCAAGCCGTAAAGCTCTCAATGCGATAACCATAAACTACAGGAACGGTTTTGTCCAGGCTT
      || ||||  | |  ||| || ||||  |     ||||    |  | || |     | ||   ||||  ||| |   | |  | |    || | ||||| ||||||||||||||| |||||||| ||||||||||||  ||||||| || || |||||||| ||  | ||||| || || || | ||| || ||||| || || |
ataaaatttattaagtgg--attattgtgtttgatacaatatt----agcacttacca---tattaaccaattatgtcttgctcatttgtaatgttgtaactct-agcagCTGTATGAAGCGATGAGGGCTGTAACATGGGCGTTATTTGCTAGTCGAAAAGCTCTAAACTCTATAACTATCAATTATAAGAATGGATTTGTTCAAGCGT

upper sequence: Vv04s0023g03680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G36950.1 (Glycine max), 3'ss of exon 2
-----gttgattacttagccattcttctgttaaaattgttattcctcaatattttctggtctgttgggcaatagtgt-tcattaacattttg-attctgactctgagcagCTGTATGAAGTGATGAGGGATGTAACATGGGCACTATTTGCAAGCCGTAAAGCTCTCAATGCGATAACCATAAACTACAGGAACGGTTTTGTCCAGGCTT
      || ||||  | |  |||||| ||||  |     ||||    |  | || |     | ||   ||||  ||| |   | |  | |    || | ||||| ||||||||||||||| |||||||| ||||||||||||  ||||||| || || |||||||| ||  | ||||| || ||||| | |||||| ||||| || || |
ataaaatttattaagtgg--attcttgtgtttgatacaatatt----agcacttacca---tattaaccaattatgtcttgcttatttgtaatgttgtaactct-agcagCTGTATGAAGCGATGAGGGCTGTAACATGGGCGTTATTTGCTAGTCGGAAAGCTCTAAACTCTATAACTATCAACTATAAGAACGGATTTGTTCAAGCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctggtctgttgggcaatagtgttcattaacattttgattctgactctgagcagCTGTATGAAGTGATGAGGGATGTAACATGGGCACTATTTGCAAGCCGTAAAGCTCTCAATGCGATAACCATAAACTACAGGAACGGTTTTGTCCAGGCTT
                                       ttctgac  putative branch site (score: 2)
                          attaacattttgatt  TA-rich tract