Sequence
atgc intronic sequence ATGC exonic sequence...gctttccacatgtgtatggctctgcttcctaatgcagtttattttgttttattttatttttgtgtatttttttcttttttttttacctctcgtgaaatagGTAAGGTCTGTGATGCGGTTGAAGTAGCCGGAAGGAATGTTATGTCAACATCATCCACTGTGACCACTGGACTTGTGTCACATAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g03670.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G36960.1 (Glycine max), 3'ss of exon 2
gctttccacatgtgtatggct--ctgcttcctaatgcagtttattttgttttatttt--atttttg----tgtatttttttcttttttttttacctctcgtgaaatagGTAAGGTCTGTGATGCGGTTGAAGTAGCCGGAAGGAATGTTATGTCAACATCATCCACTGTGACCACTGGACTTGTGTCACATAG
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------atcatttaccgagctagttattgcttgata-agtttgtcctggaaaagtttgaattttcaaacttacataccctcttatgtttcaaacttcttgt-aaatagGTAAAGTGTGTGATGCTGTTGAAGTAGCTGGAAAAAATGTCATGTCAACATCATCAACTGTGACAACTGAGCTTGTCGATCACAG
upper sequence: Vv04s0023g03670.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G08300.1 (Glycine max), 3'ss of exon 2
gctttccacatgtgtatggct--ctgcttcctaatgcagtttattttgttttattttatttttgtgtattt---ttttctttttttttt---acctctcgtgaaatagGTAAGGTCTGTGATGCGGTTGAAGTAGCCGGAAGGAATGTTATGTCAACATCATCCACTGTGACCACTGGACTTGTGTCACATAG
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------atcattttccgagctagttattgcttgata-agtttgtcctggaaaagtttaaattttcaaatttaaataccctcttatgtttcaaacttcttgt-aaatagGTAAAGTGTGCGATGCTGTTGAAGTAACTGGAAAAAATGTCATGTCAACATCATCAACTGTGACAACTGAGCTTGTCGATCACAG
upper sequence: Vv04s0023g03670.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G17840.1 (Arabidopsis thaliana), 3'ss of exon 2
---gctttccacatgtgtatggctctgcttcctaatgcagtttattttgttttattttatttttgtgtatttttttcttttttttttacctctcgtgaaatagGTAAGGTCTGTGATGCGGTTGAAGTAGCCGGAAGGAATGTTATGTCAACATCATCCACTGTGACCACTGGACTTGTGTCACATAG
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gtaagtctaca-atatacttaactcgacttc---atgcggctatctttaggtaatcatgatcat-tgaaactgttgattcctgttttg-----------atagATAAGGTCTGTGACGCTGTTGAAGTAGCTGGGAGGAATGTAATGTCAACCTCTTCCACTGTTACAACCGAACTCGTTGATCACAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttttattttatttttgtgtatttttttcttttttttttacctctcgtgaaatagGTAAGGTCTGTGATGCGGTTGAAGTAGCCGGAAGGAATGTTATGTCAACATCATCCACTGTGACCACTGGACTTGTGTCACATAG
tttatttttgtgtatt CT-rich tract
attttatttttgtgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gctttccacatgtgtatggctctgcttcctaatgcagtttattttgttttattttatttttgtgtatttttttcttttttttttacctctcgtgaaatagGTAAGGTCTGTGATGCGGTTGAAGTAGCCGGAAGGAATGTTATGTCAACATCATCCACTGTGACCACTGGACTTGTGTCACATAG
- - -ccacatg
- - - - - - tgtatgg
- - - - - - - - - - - tgcttcc
- - - - - - - - - - - - - - - aatgcag