1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aggattttctttgaattttttttttccgtgaacggtgcttgcttgcgatttgagtgatttgtttctgattgaaactttttaattttttctttctgtacagTCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTCCGAGTTTTGGTCACTCCCACAAGCGATCTCGGCAAGATCTTGGCGTGCA
species | Vitis vinifera |
transcript | Vv04s0023g03620.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAG TCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTCEST: gi|110718273|gb|EE094914.1|EE094914
genomic: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAGgtctcgatgc ... ttctgtacagTCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTC
EST: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAG CCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTCEST: gi|71865268|gb|DT014323.1|DT014323
genomic: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAGgtctcgatgc ... ttctgtacagTCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTC
EST: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAG TCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTCEST: gi|37185661|gb|CF605014.1|CF605014
genomic: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAGgtctcgatgc ... ttctgtacagTCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTC
EST: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAG TCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGAAAAGGGGTCEST: gi|110723511|gb|EE100909.1|EE100909
genomic: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAGgtctcgatgc ... ttctgtacagTCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTC
EST: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAG TCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTCEST: gi|37188389|gb|CF607738.1|CF607738
genomic: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAGgtctcgatgc ... ttctgtacagTCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTC
EST: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAG TCAAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTCEST: gi|110702751|gb|EE079006.1|EE079006
genomic: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAGgtctcgatgc ... ttctgtacagTCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTC
EST: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAG TCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTCEST: gi|110687737|gb|EE065489.1|EE065489
genomic: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAGgtctcgatgc ... ttctgtacagTCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTC
EST: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAG TCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGAAAAGGGGTCEST: gi|110689406|gb|EE065602.1|EE065602
genomic: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAGgtctcgatgc ... ttctgtacagTCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTC
EST: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAG TCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGAAAAGGGGTCEST: gi|110730475|gb|EE107599.1|EE107599
genomic: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAGgtctcgatgc ... ttctgtacagTCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTC
EST: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAG TCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTCEST: gi|71864038|gb|DT013093.1|DT013093
genomic: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAGgtctcgatgc ... ttctgtacagTCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTC
EST: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAG TCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTC
genomic: TTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAGgtctcgatgc ... ttctgtacagTCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTC
cgatttgagtgatttgtttctgattgaaactttttaattttttctttctgtacagTCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTCCGAGTTTTGGTCACTCCCACAAGCGATCTCGGCAAGATCTTGGCGTGCA
ttttaat putative branch site (score: 3)
ctttttaattttttct CT-rich tract
tttctgattgaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggattttctttgaattttttttttccgtgaacggtgcttgcttgcgatttgagtgatttgtttctgattgaaactttttaattttttctttctgtacagTCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTCCGAGTTTTGGTCACTCCCACAAGCGATCTCGGCAAGATCTTGGCGTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - gcttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattg