Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgtggtcaacatccacaatagtccttcctgatatggtattcaaattcatgctacccgaacccgaaagagagagtgattattggtttggtatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCCAATCATAGCAGACTGTCCATAGCAACATTCCAAAACCCCGCACCGG

Basic information

species Vitis vinifera
transcript Vv04s0023g03370.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os04g56700.1 (Oryza sativa), 3'ss of exon 2
tatgtggtcaacatccacaata-gtccttcctgatatggtattcaaattcatgctacccgaacccgaaagagagagtgattattggtttggtatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCCAATCATAGCAGACTGTCCATAGCAACATTCCAAAACCCCGCACCGG
  || |  | ||  ||||| |   |||||  |||| | || ||  |  ||||||       | |    ||  |  ||||  | |            ||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||| |     || | ||||| || || || ||||| ||||| || ||||
-gtgagtactacggccacactgtatccttggtgattttgttttaga--tcatgc-------atctcttaggcaatgtga--act------------tgcagTATCTGAGCAATGGGAGGTTCAAGAACGCGGATCACCAGGCGGTGGTGAACTCCGACTGCTGCCGGCTGTCGATCGCGACGTTCCAGAACCCGGCGCCGG

upper sequence: Vv04s0023g03370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G062396_T01 (Zea mays), 3'ss of exon 2
tatgtggtcaacatccacaatagtccttcctgatatggtattcaaattcatgctacccgaacc-cgaaagagagagtgattattggtttggtatg---gtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCCAATCATAGCAGACTGTCCATAGCAACATTCCAAAACCCCGCACCGG
      || |   |||    |  | | || |  | || |  |    ||||||| |  |   |   ||||  | | |||||          ||| |   ||||||   |||||||| || ||||||||||| || || ||||| ||||||||||||||  |    ||| | |||||||| || || ||||| ||||| || || |
------gtgagtctccgt--tccttcgtcttcgtttgttcgttcg-ttcatgcaatgcatgcggtgaaaatgtgtgtgatatccatgaacgtacgtacgtgcagCTCCTGAGCAACGGCAGGTTCAAGAACGCGGACCACCAGGCGGTGGTGAACTCGGAGTGCAGCCGCCTGTCCATCGCCACGTTCCAGAACCCGGCGCCCG

upper sequence: Vv04s0023g03370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G05470.1 (Glycine max), 3'ss of exon 2
tatgtggtcaacatccacaatagtccttcctgatatggtattcaaattcatgctacccgaacccgaaagagagagtgattattggtttg-gtatgg-tgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCCAATCATAGCAGACTGTCCATAGCAACATTCCAAAACCCCGCACCGG
| | |  | |  |    ||  |   ||   || | ||    |  | ||  |  | |   |     |       | |  ||  ||||  | | |||  |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |  |||||||||| || || |||||||| |||||  
tttatttttatgaa--gcagcaagtctatttggtttgaccgtgtactttgtttttcataatttaaatttgttcatttttttgtggtgggtgcatgaatgcagTATCTGACCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCAAATCATAGCCGTTTGTCCATAGCCACGTTTCAAAACCCAGCACCAA

upper sequence: Vv04s0023g03370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G05450.2 (Glycine max), 3'ss of exon 2
---tatgtggtcaacatccacaatagtccttcctgatatggtattcaaattcatgctacccgaacccgaaagagagagtgattattggtttggtatgg-tgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCCAATCATAGCAGACTGTCCATAGCAACATTCCAAAACCCCGCACCGG
   | | |    | || | |   || |  ||  |||    ||| |    ||      |    ||   |          ||  |  ||| |    |||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||| |  |||||||||| || || |||||||| |||||  
ttatttttatgaagcagcaagtctattggtt--tgaccgtgtactttgtttttcataatttaaatttgttcatttttttg--tggtgggtgcacatgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCAAACCATAGCCGTTTGTCCATAGCCACTTTTCAAAACCCAGCACCAA

upper sequence: Vv04s0023g03370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G23880.1 (Glycine max), 3'ss of exon 2
tatgtggtcaacatccacaatagtcct-tcctgatatggtattcaaattcatgctacccgaacccgaaagagagagt--gattattggtttgg-tatg---gtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCCAATCATAGCAGACTGTCCATAGCAACATTCCAAAACCCCGCACCGG
       | ||  |  |   || |  | ||  |  | ||  ||  |     | ||       ||  ||  |   | |   ||| | ||| ||| |       ||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||| || |||||| |  |||||||||| || || |||||||| | |||  
------attaat-tttattttatttttatcaagcaagggcttttgaccgtgtactttgttttccataataatttattcaaattttgggtgtgggtgcatccatgcagTATCTGAGCAATGGAAGGTTCAAGAGTGCTGATCATCAAGCGGTGGTGAACTCAAACCATAGCCGTTTGTCCATAGCCACGTTTCAAAACCCTGTACCAA

upper sequence: Vv04s0023g03370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G37120.1 (Glycine max), 3'ss of exon 2
tatgtggtcaacatccacaatagtccttcctgatatggtattcaaattcat-gctacccgaacccgaaagagaga-gtgattattggtttggtatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCCAATCATAGCAGACTGTCCATAGCAACATTCCAAAACCCCGCACCGG
 || |      |||  |  ||| |      |  |    | | |  ||  ||  ||    |||  | |   |   | | |  ||     ||  | || ||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |     ||| |  | |||||||| |||||||||||||| ||||  |
aatatttcttccatttatgatatttaactttttttctttctacctatctattactgagagaattcaattaatttatgcgggtaacatatt--tgtgatgcagTATCTGAGTAATGGAAGGTTCAAGAATGCTGATCACCAAGCAGTGGTGAACTCAAGCTGCAGCCGTGTATCCATAGCCACATTCCAAAACCCAGCACAAG

upper sequence: Vv04s0023g03370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G51240.1 (Arabidopsis thaliana), 3'ss of exon 2
tatgtggtcaacatccacaatagtccttcctgatat-ggtattcaaattcatgctacccgaacccgaaagagagagtgattattggtttggtatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCCAATCATAGCAGACTGTCCATAGCAACATTCCAAAACCCCGCACCGG
                  | || ||  |||   ||| ||  ||    ||  |               |   |   || | | ||| ||||   || || ||| | ||||||||||||||||||||||||||||||| || || ||||||||||| ||    |||||| | |||||||| || ||||| |||||||| ||||
---------------gttagtactctatccatttattggcttttttgtttctctgtttttggttttgacttg---gtcaatcttgatttgtcttgatgaagTTTTTGAGCAATGGGAGGTTCAAGAATGCTGATCATCAGGCCGTGGTGAACTCTAACTCGAGCAGATTATCCATAGCCACGTTCCAGAACCCCGCGCCGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83276178|gb|DV940186.1|DV940186
EST:     ACCAGGGTCAT                         TATNTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: ACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|110388450|gb|EC953205.1|EC953205
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|110373938|gb|EC938957.1|EC938957
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|32270755|gb|CD719914.1|CD719914
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|110370756|gb|EC932860.1|EC932860
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|110701083|gb|EE078300.1|EE078300
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCNACCTTGGCGACCACGGTCAT                         TATCTGANCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|110698757|gb|EE076623.1|EE076623
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|32271969|gb|CD721128.1|CD721128
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|110375193|gb|EC940155.1|EC940155
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|110703765|gb|EE080895.1|EE080895
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|110397720|gb|EC963567.1|EC963567
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|110362887|gb|EC926446.1|EC926446
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|110698062|gb|EE075648.1|EE075648
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAAACTTGGCGACCACGGTCAT                         TATCTGAACAATGGG
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGG
EST: gi|229418627|gb|GO652864.1|GO652864
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|110732333|gb|EE107530.1|EE107530
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAACAATGGGGAGGTTCAAGAATGCTGATCACCCAGCGGTGGTGAA
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGG-AGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAA
EST: gi|110362644|gb|EC926191.1|EC926191
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|110404387|gb|EC969363.1|EC969363
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|110728140|gb|EE103450.1|EE103450
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|110363545|gb|EC927140.1|EC927140
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|34542905|gb|CF511137.1|CF511137
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAA
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAA
EST: gi|110702100|gb|EE080424.1|EE080424
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|110709501|gb|EE085017.1|EE085017
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|110370602|gb|EC930119.1|EC930119
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|110362823|gb|EC926379.1|EC926379
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|110363518|gb|EC927112.1|EC927112
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|30299454|gb|CB976248.1|CB976248
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGGATCGA-AATGCTGATCACCA
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGT-TCAAGAATGCTGATCACCA
EST: gi|110699225|gb|EE076035.1|EE076035
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|110424704|gb|EC991073.1|EC991073
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|110392022|gb|EC957141.1|EC957141
EST:     TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|156736470|gb|EV240591.1|EV240591
EST:     TTCA-CCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGGAC
genomic: T-CAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|110699150|gb|EE075897.1|EE075897
EST:     TTCCACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCAT                         TATCTGNACCA-TGGGAAGGT-CAAGAATGCTGA
genomic: TTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATgtaagcatca ... tatggtgcagTATCTG-AGCAATGGGA-GGTTCAAGAATGCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcatgctacccgaacccgaaagagagagtgattattggtttggtatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCCAATCATAGCAGACTGTCCATAGCAACATTCCAAAACCCCGCACCGG
                              tgattatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatgtggtcaacatccacaatagtccttcctgatatggtattcaaattcatgctacccgaacccgaaagagagagtgattattggtttggtatggtgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCCAATCATAGCAGACTGTCCATAGCAACATTCCAAAACCCCGCACCGG

- - - - - acatcca
- - - - - - - - - - - - ccttcct
- - - - - - - - - - - - - - - - - - - - - - - -tcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgaaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtttgg