Sequence
atgc intronic sequence ATGC exonic sequence...aaaaaaaaacccattttctctttaagccgaaacgcagagagagagatttgaagctagctttcattattgtactctctaatgattcttcctttgggaccagGACTGTTCAATATCAGCAGGTGGTGGTCGTGGTGGGGTTGGTGGATCTATAAACCAGAGCTTCGAATGGGTTGGCATGGACCCATATTCTTCATCTTATG
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttgaagctagctttcattattgtactctctaatgattcttcctttgggaccagGACTGTTCAATATCAGCAGGTGGTGGTCGTGGTGGGGTTGGTGGATCTATAAACCAGAGCTTCGAATGGGTTGGCATGGACCCATATTCTTCATCTTATG
ctctaat putative branch site (score: 3)
ttcttccttt putative PPT
tttcattatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaaaaaaacccattttctctttaagccgaaacgcagagagagagatttgaagctagctttcattattgtactctctaatgattcttcctttgggaccagGACTGTTCAATATCAGCAGGTGGTGGTCGTGGTGGGGTTGGTGGATCTATAAACCAGAGCTTCGAATGGGTTGGCATGGACCCATATTCTTCATCTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
aaaaaaa
- - - - -cccattt
- - - - - - - - - - -ttaagcc
- - - - - - - - - - - - - - -aaacgca
- - - - - - - - - - - - - - - - - -agagaga
- - - - - - - - - - - - - - - - - - - - - - - - tgaagct