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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaatttctactaatcaacacttgatttcgctcttacgcttttattagtaattctgttttaagtttttgagtatagtcatcagtcatggtggttgtgttagGTTTTGGAGCCCCACGCCAGGCGTGTGGATGAAGGGTTCAGCGAAGCTCGTGTGCTGGTAGAGGTTTCTTTGTTGCCTGACAAGATCCGTATTTCATCTG

Basic information

species Vitis vinifera
transcript Vv04s0023g02750.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g02750.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G37580.1 (Glycine max), 3'ss of exon 2
gtcaatttctactaatcaac--acttgatttcgctcttacgcttttatt---agtaattctgttttaagtttttgagtatagtcatcagtcatggtggttgtgttagGTTTTGGAGCCCCACGCCAGGCGTGTGGATGAAGGGTTCAGCGAAGCTCGTGTGCTGGTAGAGGTTTCTTTGTTGCCTGACAAGATCCGTATTTCATCTG
     | | ||||      |  | ||   ||     | |    ||| ||   |||  | ||  | |  ||   ||  | ||   |   ||  ||| |||      ||||||||||||||||    || ||||| |||||||| ||||| || || |||||| |||  ||||| |||||||||||||||||  | ||| |     |||
-----tctttacttgcttgctgatttagcttgataataataactttgttctgagtggtacttgtattggtaactggat-tatgtacttgtggtgggggtctcac-agGTTTTGGAGCCCCATAGTAGACGTGTCGATGAAGGATTCAGTGAGGCGCGTGTGTTGGCTGAGGTGTCTTTGTTGCCTGACAAAGTACGTGTGATGACTG

upper sequence: Vv04s0023g02750.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G07720.1 (Glycine max), 3'ss of exon 2
gtcaatttctactaatcaac--acttgatttcgctcttacgcttttattagtaattctgttttaagtttttgagtatagtcatcagtcatggtggttgtgttagGTTTTGGAGCCCCACGCCAGGCGTGTGGATGAAGGGTTCAGCGAAGCTCGTGTGCTGGTAGAGGTTTCTTTGTTGCCTGACAAGATCCGTATTTCATCTG
   ||| | |||       |  | ||    |     | |    ||| ||  | | |     ||   ||  | | |    |    | |  ||||||  ||  |||||||||||||||||    ||||| || |||||||| ||||| || || |||||| |||  ||||| |||||||| ||||||||  | ||| ||    |||
--taatctttacctgcttgctgatttagcgtgataataatatctttgttc-tgactggtacttgtattggtaactgggttgtgtaattgtggtgggggt-ctagGTTTTGGAGCCCCATAGTAGGCGCGTCGATGAAGGATTCAGTGAGGCACGTGTGTTGGCTGAGGTGTCTTTGTTACCTGACAAAGTACGTGTTATGACTG

upper sequence: Vv04s0023g02750.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G51050.1 (Arabidopsis thaliana), 3'ss of exon 2
gtcaatttctactaatcaacact-tgatttcgctcttacgcttttattagtaattctgttttaagttt--ttgagtatagtcatcagtcatggtg-gttgtgttagGTTTTGGAGCCCCACGCCAGGCGTGTGGATGAAGGGTTCAGCGAAGCTCGTGTGCTGGTAGAGGTTTCTTTGTTGCCTGACAAGATCCGTATTTCATCTG
   || |  |  |      |    |||||  ||  || | ||| |||   |  | ||||| |  |||   || |||   |  |    | ||| |  ||||  ||||||| ||||||| ||  ||||||||||||||||||| || || ||||| ||||| || |  ||  |  || | |||||||||||||||||| || | || |
---aactaatgatgtgaggcttggtgattatgcattt-ctcttctatggtt--tgctgttctgtgttggattaagttctgaaactgttgatgttttgttggattagGTTCTGGAGCCTCATTCCAGGCGTGTGGATGAAGGTTTTAGTGAAGCACGTGTTCTTGCGGAAATCACTCTTTTGCCTGACAAGATCCGTGTTGCGTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352768257|gb|FQ469432.1|FQ469432
EST:     GCGACGGAAAGAAGGAGGTTCTTGTCGCCACTCACGACGCCAAAATTCAG                         GTTTTGGAGCCCCACGCCAGGCGTGTGGATGAAGGGTTCAGCGAAGCTCGT
genomic: GCGACGGAAAGAAGGAGGTTCTTGTCGCCACTCACGACGCCAAAATTCAGgtcaatttct ... gttgtgttagGTTTTGGAGCCCCACGCCAGGCGTGTGGATGAAGGGTTCAGCGAAGCTCGT
EST: gi|161719161|gb|FC069357.1|FC069357
EST:     GCGACGGAAAGAAGGAGGTTCTTGTCGCCACTCACGACGCCAAAATTCAG                         GTTTTGGAGCCCCACGCCAGGCGTGTGGATGAAGGGTTCAGCGAAGCTCGT
genomic: GCGACGGAAAGAAGGAGGTTCTTGTCGCCACTCACGACGCCAAAATTCAGgtcaatttct ... gttgtgttagGTTTTGGAGCCCCACGCCAGGCGTGTGGATGAAGGGTTCAGCGAAGCTCGT
EST: gi|352769223|gb|FQ471372.1|FQ471372
EST:     GCGACGGAAAGAAGGAGGTTCTTGTCGCCACTCACGACGCCAAAATTCAG                         GTTTTGGAGCCCCACGCCAGGCGTGTGGATGAAGGGTTCAGCGAAGCTCGT
genomic: GCGACGGAAAGAAGGAGGTTCTTGTCGCCACTCACGACGCCAAAATTCAGgtcaatttct ... gttgtgttagGTTTTGGAGCCCCACGCCAGGCGTGTGGATGAAGGGTTCAGCGAAGCTCGT
EST: gi|161712184|gb|FC061556.1|FC061556
EST:     GCGACGGAAAGAAGGAGGTTCTTGTCGCCACTCACGACGCCAAAATTCAG                         GTTTTGGAGCCCCACGCCAGGCGTGTGGATGAAGGGTTCAGCGAAGCTCGT
genomic: GCGACGGAAAGAAGGAGGTTCTTGTCGCCACTCACGACGCCAAAATTCAGgtcaatttct ... gttgtgttagGTTTTGGAGCCCCACGCCAGGCGTGTGGATGAAGGGTTCAGCGAAGCTCGT
EST: gi|352773091|gb|FQ470706.1|FQ470706
EST:     GCGACGGAAAGAAGGAGGTTCTTGTCGCCACTCACGACGCCAAAATTCAG                         GTTTTGGAGCCCCACGCCAGGCGTGTGGATGAAGGGTTCAGCGAAGCTCGT
genomic: GCGACGGAAAGAAGGAGGTTCTTGTCGCCACTCACGACGCCAAAATTCAGgtcaatttct ... gttgtgttagGTTTTGGAGCCCCACGCCAGGCGTGTGGATGAAGGGTTCAGCGAAGCTCGT
EST: gi|352767961|gb|FQ466170.1|FQ466170
EST:     GCGACGGAAAGAAGGAGGTTCTTGTCGCCACTCACGACGCCAAAATTCAG                         GTTTTGGAGCCCCACGCCAGGCGTGTGGATGAAGGGTTCAGCGAAGCTCGT
genomic: GCGACGGAAAGAAGGAGGTTCTTGTCGCCACTCACGACGCCAAAATTCAGgtcaatttct ... gttgtgttagGTTTTGGAGCCCCACGCCAGGCGTGTGGATGAAGGGTTCAGCGAAGCTCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtaattctgttttaagtttttgagtatagtcatcagtcatggtggttgtgttagGTTTTGGAGCCCCACGCCAGGCGTGTGGATGAAGGGTTCAGCGAAGCTCGTGTGCTGGTAGAGGTTTCTTTGTTGCCTGACAAGATCCGTATTTCATCTG
        tgttttaagttttt  TA-rich tract