Sequence
atgc intronic sequence ATGC exonic sequence...ctcaacctgaactgcaacctacaactttcccatattcttcattatttagtgtgccatagtcactcattctcattctaacacttttaataccctttcacagGCTTTTGTGGAGAAACAGAGGAGGAATATGCAGACACAATAAGCCTTGTAAAGGCTGTTGGTTATGACATGGCATACATGTTTGCTTACAGCATGAGGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02640.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os11g38030.1 (Oryza sativa), 3'ss of exon 2
ctcaacctgaactgcaacctacaactttcccatattcttcattatttagtgtgcca-tagtcactcattctcattctaacacttttaataccctt---tcacagGCTTTTGTGGAGAAACAGAGGAGGAATATGCAGACACAATAAGCCTTGTAAAGGCTGTTGGTTATGACATGGCATACATGTTTGCTTACAGCATGAGGGA
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----tgccattttacaattagcaattacacatctgttttctgagtgcacttcgttaatgattattcacttctattttgacaaaaaaaaatctcttgtctattagGTTTTTGTGGAGAGACAGAAGAGGAACATGCTGAGACTCTTACCCTTGTAAGGGCTGTTGGATATGATATGGCCTACATGTTTGCATATAGCATGAGAGA
upper sequence: Vv04s0023g02640.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G07790.1 (Glycine max), 3'ss of exon 3
ctcaacctgaactgcaacctacaactttcccatatt-cttcattatttagtgtgccatagtcactcattctcattctaacacttttaataccc-----tttcacagGCTTTTGTGGAGAAACAGAGGAGGAATATGCAGACACAATAAGCCTTGTAAAGGCTGTTGGTTATGACATGGCATACATGTTTGCTTACAGCATGAGGGA
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----tcctagttactaccctgtaatttttctttgccacactaatattt--tactgtataaacaacttacctctgcttgcaatctttaatgtttgcaattctaacagGATTTTGTGGAGAAACAGAGGAGGAGCATTCTGAGACGTTAACTCTAGTAAAAGCTGTTGGTTATGATATGGCATTCATGTTTGCGTATAGCATGAGGGA
upper sequence: Vv04s0023g02640.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G37500.1 (Glycine max), 3'ss of exon 3
ctcaacctgaactgcaacctacaactttcccatatt-cttcattatttagtgtgccatagtcactcattctcattctaacacttttaataccct-----ttcacagGCTTTTGTGGAGAAACAGAGGAGGAATATGCAGACACAATAAGCCTTGTAAAGGCTGTTGGTTATGACATGGCATACATGTTTGCTTACAGCATGAGGGA
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--aaaacctagttattac--gcagtttttctttgccacaccaatattt--tactgtataagcaacttgcctctgcttgcaatctttaatgtttgcaatgctaacagGATTTTGTGGAGAAACAGAGGAGGAGCATTCTGAGACGTTGACTCTAATAAAAGCTGTTGGTTATGATATGGCATTCTTGTTTGCTTATAGCATGAGGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttagtgtgccatagtcactcattctcattctaacacttttaataccctttcacagGCTTTTGTGGAGAAACAGAGGAGGAATATGCAGACACAATAAGCCTTGTAAAGGCTGTTGGTTATGACATGGCATACATGTTTGCTTACAGCATGAGGGA
taccctttc CT-rich tract
taacacttttaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctcaacctgaactgcaacctacaactttcccatattcttcattatttagtgtgccatagtcactcattctcattctaacacttttaataccctttcacagGCTTTTGTGGAGAAACAGAGGAGGAATATGCAGACACAATAAGCCTTGTAAAGGCTGTTGGTTATGACATGGCATACATGTTTGCTTACAGCATGAGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
ctcaacc
- - - - -aactgca
- - - - - - - - -cctacaa
- - - - - - - - - - - - ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - -tgccata