Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattattatcagttgtcacatttttcagtcttgttcttgacatggcacagctaccatctttagccagcatggtgatatttacttctttttgagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGTGCCAGCTTGAGTGGTTCCAACAACAACATTCCTGCTCCAAACAACACCT

Basic information

species Vitis vinifera
transcript Vv04s0023g02570.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g02570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G407740_T01 (Zea mays), 3'ss of exon 1
gtaagtattattatcagttgtcacatttttcagtcttgttcttgacatggcacagctaccatctttagccagcatggtgatatttacttctttttgagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGTGCCAGCTTGAGTGGTTCCAACAACAACATTCCTGCTCCAAACAACACCT
||| |||  |  | ||| |    ||     || |  || | |    |||       ||   | | ||   | ||| |   || || | |    |  |    |||||| || || ||  |||||||||||||||||||||| ||||||||       |||||| |||| || || ||||||  ||| |||||||| ||| || |  
gtacgtacca--agcagctaatgcagag--caataatggtttatttatg-------tat-gtatgtatggaacatagc--taattgcatgcgctgcacc--acagACCGGCGGACCCGGCTGGGAGGTGCCACTGGGGAGGAGGGACTCGCTGACGGCCAGCCTGAGCGGCTCGAACAACCTCATCCCTGCTCCCAACGACTCTC

upper sequence: Vv04s0023g02570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G069093_T01 (Zea mays), 3'ss of exon 1
gtaagtattattatcagttgtcaca-tttttcagtcttgttcttgacatggcacagctaccatctttagccagcatggtgatatttacttctttttgagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGTGCCAGCTTGAGTGGTTCCAACAACAACATTCCTGCTCCAAACAACACCT
|||   ||   ||  |  ||   ||   || |||  | ||   |    |  ||       || |   | |    |||||     |  |   |      |  | ||||| || || ||| |||||||||||||||||||||| ||||||||       |||||| |||| || |||||||||  ||| |||||||| ||| || || 
gtacccatcgatacgaactgatgcagccttgcagcgtcgtctatacatttacattatcgtcaccccgatcgtcgatggtctcggtcgccgatcgagctgcatgcagACCGGCGGACCTGGCTGGGAGGTGCCACTGGGGAGGAGGGACTCGCTGACGGCCAGCCTGAGCGGCTCCAACAACCTCATCCCTGCTCCCAACGACTCCC

upper sequence: Vv04s0023g02570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G24610.1 (Glycine max), 3'ss of exon 2
gtaagtattattatcagttgtcacatttttcagtcttgttcttgacatggcacagctacca-tctttagccagcatgg-tgatatttacttctttttgagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGTGCCAGCTTGAGTGGTTCCAACAACAACATTCCTGCTCCAAACAACACCT
      || |  ||      | | | |    | | || ||||  |  |    || ||   |  ||||  | | || |  ||||      | | ||||  || |||||||||| || || |||||||| || ||  | || |||||||||||   |||||| ||| | ||||| |||||||||||||| || || ||||||||||| |
------ataaaaatagaaaataagaataaaaactatt-ttctcaaattaaaccatctcttaacctttcactatcaagcctgattcactttcccttttttgtatacagACTGGTGGACCAAGCTGGGAAGTACCCTTAGGCAGAAGGGACTCACTAGGTGCAAGCATAAGTGGCTCCAACAACAACATCCCAGCCCCAAACAACACAT

upper sequence: Vv04s0023g02570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G07670.1 (Glycine max), 3'ss of exon 2
gtaagtattattatcagttgtcacatttttcagtcttgttcttgacatggcacagctaccatctttagccagcatggtgatatttacttctttttgag-tgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGTGCCAGCTTGAGTGGTTCCAACAACAACATTCCTGCTCCAAACAACACCT
|||| |||  |  |    | |  || | |     | |  |||||| ||       ||| ||         | | | |||||     ||| ||| | |  | | ||||| || || || |||||||  || ||  |||| |||||||||||    ||||| ||  | ||||| ||||| ||||||||||||||||| |||||||| |
gtaaatatcttctttttattttgcactctggtacccttatcttgatatt---tgactatcaa--------aacttagtgatcaagccttatttataatctctgcagACCGGTGGACCAAGCTGGGGAGTACCCTTGGGCAGAAGGGACTCTCTTGGTGCGAGTATTAGTGGCTCCAATAACAACATTCCTGCTCCCAACAACACAT

upper sequence: Vv04s0023g02570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G05930.1 (Glycine max), 3'ss of exon 2
gtaagtattattatcagttgtcacatttttcagtcttgttcttgacatggcacagctaccatctttagccagcatggtga--tatttacttct-ttttgagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGTGCCAGCTTGAGTGGTTCCAACAACAACATTCCTGCTCCAAACAACACCT
        ||  || || ||  || ||| |   |     |    | |    | |   |  |    ||     ||   | |   ||| ||| || | |    | |  ||||||| || || | |||||| || ||  | || |||||||||||   |||||| ||| | ||||| |||||||||||||| || || ||||||||||| |
--------taaaataaggtgatacctttgtagttaaaagtgaaaatagaaaataagaataaaaaatatttctcaaattaaaccattcactactatctcttttatgtagACTGGTGGACCAAACTGGGAAGTACCTTTAGGCAGAAGGGACTCACTAGGTGCAAGCATAAGTGGCTCCAACAACAACATCCCAGCCCCAAACAACACAT

upper sequence: Vv04s0023g02570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G66390.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaagtattattatcagttgtcacatttttcagtcttgttcttgacatggcacagctaccatctttagccagcatggtgatatttacttc-tttttgagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGTGCCAGCTTGAGTGGTTCCAACAACAACATTCCTGCTCCAAACAACACCT
                                    |  || | |||   |||  |   ||   ||||      |  |   | | | ||      |||    |||||| || || || |||||||| || || || || ||||| ||| | ||||| || ||||||||||||||||||||| |||||||||||||||||||||| |
-------------------------------gtaagtactcatcacaattcactacacacaaaattagttgat-tattatcaataatttgacaaatgaaataacagACGGGTGGACCGAGCTGGGAAGTACCTCTAGGAAGAAGAGACGCGAGAGGAGCAAGCTTGAGTGGTTCCAACAACGACATTCCTGCTCCAAACAACACTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351041142|gb|FQ444119.1|FQ444119
EST:     TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTA                         ACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
genomic: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
EST: gi|110363385|gb|EC926968.1|EC926968
EST:     CTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTA                         ACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
genomic: CTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
EST: gi|349830006|gb|FQ420266.1|FQ420266
EST:     TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTA                         ACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
genomic: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
EST: gi|110378383|gb|EC943513.1|EC943513
EST:     TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTA                         ACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
genomic: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
EST: gi|352794769|gb|FQ475264.1|FQ475264
EST:     TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCGTA                         ACTGGGGGGCCTAGCTGGAAGGTGCGC-CTGGGGAGAGGGGACTCTACAGG
genomic: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGC-CACTGGGGAGAAGGGACTCCAGAGG
EST: gi|71876626|gb|DT025681.1|DT025681
EST:     TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTA                         ACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
genomic: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
EST: gi|351025527|gb|FQ435220.1|FQ435220
EST:     TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTA                         ACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
genomic: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
EST: gi|352787065|gb|FQ476098.1|FQ476098
EST:     TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTA                         ACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
genomic: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
EST: gi|110688973|gb|EE068133.1|EE068133
EST:     TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTA                         ACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
genomic: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
EST: gi|349828105|gb|FQ415433.1|FQ415433
EST:     TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTA                         ACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
genomic: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
EST: gi|349828106|gb|FQ415434.1|FQ415434
EST:     TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTA                         ACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
genomic: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacagctaccatctttagccagcatggtgatatttacttctttttgagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGTGCCAGCTTGAGTGGTTCCAACAACAACATTCCTGCTCCAAACAACACCT
                                tttacttctttttg  CT-rich tract
                             atatttacttcttttt  TA-rich tract