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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgactctttgctctaaattaaatagtggtttatgatgatttattatcaaccaagaagaaagtatgtaagttggaagtttcaattgttcatcagGTTCCTCAAGGGCTGGAGAGTAACAAAGGGAACATTTATATGGCAAGTTCGAGCCCACCATGCGTGCTTAAAGTATACTATGAGCAATTCCGAACCGATT

Basic information

species Vitis vinifera
transcript Vv04s0023g02290.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110698251|gb|EE075586.1|EE075586
EST:     AAAGTCTTCATTTTATCCATTCTTCTTACAGTCTCCAATGGTTGTCTCAG                         GTTCCTCAAGGGCTGGAGAGTAACAAAGGGAACATTTATATGGCAAGTTCG
genomic: AAAGTCTTCATTTTATCCATTCTTCTTACAGTCTCCAATGGTTGTCTCAGgtgactcttt ... tgttcatcagGTTCCTCAAGGGCTGGAGAGTAACAAAGGGAACATTTATATGGCAAGTTCG
EST: gi|294965607|gb|GW837206.1|GW837206
EST:     AAAGTCTTCATTTTATCCATTCTTCTTACAGTCTCCAATGGTTGTCTCAG                         GTTCCTCAAGGGCTGGAGAGTAACAAAGGGAACATTTATATGGCAAGTTCG
genomic: AAAGTCTTCATTTTATCCATTCTTCTTACAGTCTCCAATGGTTGTCTCAGgtgactcttt ... tgttcatcagGTTCCTCAAGGGCTGGAGAGTAACAAAGGGAACATTTATATGGCAAGTTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattatcaaccaagaagaaagtatgtaagttggaagtttcaattgttcatcagGTTCCTCAAGGGCTGGAGAGTAACAAAGGGAACATTTATATGGCAAGTTCGAGCCCACCATGCGTGCTTAAAGTATACTATGAGCAATTCCGAACCGATT
                                      tttcaatt  TA-rich tract