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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgactctttgcttttaattaaaaatactggtttatgatgatttattagtaaccaaaaagaaagcaagtgagttagaaacttcaattgttcatcagGTTCCTCGAGGGCTGGAGAACAAAGGGAATATTTACATGGCCAGTTCGAGCCCACCAAGCGTGCTTAAAGCATACTATGAGCAATTCCAAAGCGATTTCT

Basic information

species Vitis vinifera
transcript Vv04s0023g02230.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110382498|gb|EC946794.1|EC946794
EST:     AAAGTCTTCATTTTGTCCATTCTTCTTATAGTCTCCAATGGTTGTCTCAG                         GTTCCTCGAGGGCTGGAGAACAAAGAGAATATTTACATGGCCAGTTCGAGC
genomic: AAAGTCTCCATTTTGTCCATTCTTCTTATAGTCTCCAATGGTTGTCTCAGgtgactcttt ... tgttcatcagGTTCCTCGAGGGCTGGAGAACAAAGGGAATATTTACATGGCCAGTTCGAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattagtaaccaaaaagaaagcaagtgagttagaaacttcaattgttcatcagGTTCCTCGAGGGCTGGAGAACAAAGGGAATATTTACATGGCCAGTTCGAGCCCACCAAGCGTGCTTAAAGCATACTATGAGCAATTCCAAAGCGATTTCT
     tagtaac  putative branch site (score: 1)
             aaaaagaaa  TA-rich tract