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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgggttctatttcagccttcttctttccccccaaattgtgttggttttggttacgtttttattcatagctcattgtcatgggtacagTTCTCTATTTTTGGTTCGTTGTCAAATGTGGGGGCCATGGTTGGGGCAATAGCCAGTGGTCAGATTGCGGAATACATCGGCAGGAAAGGG

Basic information

species Vitis vinifera
transcript Vv04s0023g01860.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G25310.3 (Glycine max), 3'ss of exon 2
gtgtgggttctatttcagccttcttctttccccccaaattgtgttggttttggttacgtttttattcatagctcattgtcatgggtacagTTCTCTATTTTTGGTTCGTTGTCAAATGTGGGGGCCATGGTTGGGGCAATAGCCAGTGGTCAGATTGCGGAATACATCGGCAGGAAAGGG
              | |    |||  |||         || | ||   |||  | | |||||  | | ||     ||    | | | ||||| ||| | ||||| || ||||| |||||||| || ||||| || || ||||| ||||||||||| || |||||||||||  | ||||||
-------------gtaaattatctggttt--------gttattttttgttttttaaggttttggtgcttaatatgtttagttcgctgcagTTTTCTTTCTTTGGATCTTTGTCTAATGTGGGAGCAATGGTGGGAGCTATAGCTAGTGGTCAGATAGCTGAATACATCGGGCGCAAAGGG

upper sequence: Vv04s0023g01860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G25310.1 (Glycine max), 3'ss of exon 2
gtgtgggttctatttcagccttcttctttccccccaaattgtgttggttttggttacgtttttattcatagctcattgtcatgggtacagTTCTCTATTTTTGGTTCGTTGTCAAATGTGGGGGCCATGGTTGGGGCAATAGCCAGTGGTCAGATTGCGGAATACATCGGCAGGAAAGGG
        ||| | |     |     ||  |       || | ||   |||  | | |||||  | | ||     ||    | | | ||||| ||| | ||||| || ||||| |||||||| || ||||| || || ||||| ||||||||||| || |||||||||||  | ||||||
-------gtctttctgtatatgtaaattatctggtttgttattttttgttttttaaggttttggtgcttaatatgtttagttcgctgcagTTTTCTTTCTTTGGATCTTTGTCTAATGTGGGAGCAATGGTGGGAGCTATAGCTAGTGGTCAGATAGCTGAATACATCGGGCGCAAAGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71885483|gb|DT034538.1|DT034538
EST:     CTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTTCCCTTTCAGAG                         TTCTCTATTTTTGGTTCGTTGTCAAATGTGGGGGCCATGGTTGGGGCAATA
genomic: CTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTTCCCTTTCAGAGgtgtgggttc ... atgggtacagTTCTCTATTTTTGGTTCGTTGTCAAATGTGGGGGCCATGGTTGGGGCAATA
EST: gi|161706203|gb|FC054967.1|FC054967
EST:     CTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTTCCCTTTCAGAG                         TTCTCTATTTTTGGTTCGTTGTCAAATGTGGGGGCCATGGTTGGGGCAATA
genomic: CTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTTCCCTTTCAGAGgtgtgggttc ... atgggtacagTTCTCTATTTTTGGTTCGTTGTCAAATGTGGGGGCCATGGTTGGGGCAATA
EST: gi|71882686|gb|DT031741.1|DT031741
EST:     CTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTTCCCTTTCAGAG                         TTCTCTATTTTTGGTTCGTTGTCAAATGTGGGGGCCATGGTTGGGGCAATA
genomic: CTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTTCCCTTTCAGAGgtgtgggttc ... atgggtacagTTCTCTATTTTTGGTTCGTTGTCAAATGTGGGGGCCATGGTTGGGGCAATA
EST: gi|71885656|gb|DT034711.1|DT034711
EST:     CTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTTCCCTTTCAGAG                         TTCTCTATTTTTGGTTCGTTGTCAAATGTGGGGGCCATGGTTGGGGCAATA
genomic: CTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTTCCCTTTCAGAGgtgtgggttc ... atgggtacagTTCTCTATTTTTGGTTCGTTGTCAAATGTGGGGGCCATGGTTGGGGCAATA
EST: gi|71882039|gb|DT031094.1|DT031094
EST:     CTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTTCCCTTTCAGAG                         TTCTCTATTTTTGGTTCGTTGTCAAATGTGGGGGCCATGGTTGGGGCAATA
genomic: CTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTTCCCTTTCAGAGgtgtgggttc ... atgggtacagTTCTCTATTTTTGGTTCGTTGTCAAATGTGGGGGCCATGGTTGGGGCAATA
EST: gi|71882706|gb|DT031761.1|DT031761
EST:     CTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTTCCCTTTCAGAG                         TTCTCTATTTTTGGTTCGTTGTCAAATGTGGGGGCCATGGTTGGGGCAATA
genomic: CTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTTCCCTTTCAGAGgtgtgggttc ... atgggtacagTTCTCTATTTTTGGTTCGTTGTCAAATGTGGGGGCCATGGTTGGGGCAATA
EST: gi|71889871|gb|DT038926.1|DT038926
EST:     CTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTTCCCTTTCAGAG                         TTCTCTATTTTTGGTTCGTTGTCAAATGTGGGGGCCATGGTTGGGGCAATA
genomic: CTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTTCCCTTTCAGAGgtgtgggttc ... atgggtacagTTCTCTATTTTTGGTTCGTTGTCAAATGTGGGGGCCATGGTTGGGGCAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattgtgttggttttggttacgtttttattcatagctcattgtcatgggtacagTTCTCTATTTTTGGTTCGTTGTCAAATGTGGGGGCCATGGTTGGGGCAATAGCCAGTGGTCAGATTGCGGAATACATCGGCAGGAAAGGG
                       tttttattcata  TA-rich tract