Sequence
atgc intronic sequence ATGC exonic sequencegttgtgagctcatggactagcttactgacattaccctgcttctatataaaacaaacctcatttatacagaatagatgtcctttccaatgagcattgctttctaacagtcaatttttttcctaatcatttcaattatcaaaatttcagttgcaggaagTGGTCGACCGATCATGGATTGGGCAAGTAGGATGCGTATTGCATTGGGATCGGCCAAAGGGCTTGCTTACCTTCATGAAGACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g01570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G07180.1 (Glycine max), 3'ss of exon 4
gttgtgagctcatggactagcttactgacattaccctgcttctatataaaacaaacctcatttatacagaatagatgtcctttccaatgagcattgctttctaacagtcaatttttttcctaatcatttcaattat-caaaatttcagt-tgcaggaagTGGTCGACCGATCATGGATTGGGCAAGTAGGATGCGTATTGCATTGGGATCGGCCAAAGGGCTTGCTTACCTTCATGAAGACT
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-------------------------------------------atgtgagacttataataact-tataacata-----tctttctgacg-----tttttgctgggag-catcacttgtaataaaaattgctgatgtatactatggtgatatgcagGAAAGGGTAGGCCTACCATGGATTGGGCAACTAGAATGCGGATTGCAATAGGATCCGCTAAAGGGCTTGCTTATCTTCATGAGGACT
upper sequence: Vv04s0023g01570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G38110.1 (Glycine max), 3'ss of exon 1
gttgtgagctcatggactagcttactgacattaccctgcttctatataaaacaaacctcatttatacagaatagatgtcctttccaatgagcattgctttctaacagtcaatttttttcctaatcatttcaattatcaaaatttcagttgcaggaagTGGTCGACCGATCATGGATTGGGCAAGTAGGATGCGTATTGCATTGGGATCGGCCAAAGGGCTTGCTTACCTTCATGAAGACT
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------------------------------------tgcaagtgaaccaaataacttgtaac-atatttttctgatattttttatg-tgagcatctttt----gcaatcaaaattgctaatgcatattacggtgata-----------tgcagGAAAGGGTAGGCCTACCATGGATTGGCCAACTAGAATGCGGATTGCAATAGGATCCGCTAAAGGGCTTGCTTATCTTCATGAGGACT
upper sequence: Vv04s0023g01570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G25490.1 (Glycine max), 3'ss of exon 2
gttgtgagctcatggactagcttactgacattaccctgcttctatataaaacaaacctcatttatacagaatagatgtcctttccaatgagcattgctttctaacagtcaatttttttcctaatcatttcaattatcaaaatttcagttgcaggaagTGGTCGACCGATCATGGATTGGGCAAGTAGGATGCGTATTGCATTGGGATCGGCCAAAGGGCTTGCTTACCTTCATGAAGACT
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---------------------------------------acacttgtgaaaccaa--taagttgcatagtatag---tttccaacatttaattcttattttgtctagttaagtattggc-taatgtatttgatggtcaca--------tgcagGAAAGGGCATGCCTACGATGGATTGGCCTACTAGAATGCGAATTGCACTTGGATCCGCTAAAGGGCTTGCCTACCTTCATGAAGATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacagtcaatttttttcctaatcatttcaattatcaaaatttcagttgcaggaagTGGTCGACCGATCATGGATTGGGCAAGTAGGATGCGTATTGCATTGGGATCGGCCAAAGGGCTTGCTTACCTTCATGAAGACT
aatttttttcctaatc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgtgagctcatggactagcttactgacattaccctgcttctatataaaacaaacctcatttatacagaatagatgtcctttccaatgagcattgctttctaacagtcaatttttttcctaatcatttcaattatcaaaatttcagttgcaggaagTGGTCGACCGATCATGGATTGGGCAAGTAGGATGCGTATTGCATTGGGATCGGCCAAAGGGCTTGCTTACCTTCATGAAGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA