Sequence
atgc intronic sequence ATGC exonic sequence...atttctgaacctgatcaccttagttggattaaattacgattaacttagcctggtgtttttcttattattcatatttatctgtttttggaatttcattcagGCTTGGCACTTATTACCATGAATGAAGCACGGTTATGGACCGATGGACGATACTTCTTGCAGGCATCACAGGAGCTAAGCGACCAGTGGAAACTCATGCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g01300.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G169095_T01 (Zea mays), 3'ss of exon 2
atttctgaacctgatcaccttagttggattaaattacgattaacttagcctggtgtttttcttattattcatatttatctgtttttg----gaatttcattcagGCTTGGCACTTATTACCATGAATGAAGCACGGTTATGGACCGATGGACGATACTTCTTGCAGGCATCACAGGAGCTAAGCGACCAGTGGAAACTCATGCG
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gctatgtgattggctcaaact--ttgtgctagcat-tgattgaattaaac-agtttgttggttatcacgtttgtttctcagtgttcatattgaattttaaacagGCTTGGCTCTTATCACCATGAAAGAGGCATTGTTGTGGACGGATGGCCGCTACTTCTTGCAGGCAACACAGCAACTGAGCGATCGTTGGAAACTTATGCG
upper sequence: Vv04s0023g01300.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G06900.1 (Glycine max), 3'ss of exon 2
atttctgaacctgatcaccttagttggattaaattacgattaacttagcctggtgtttttcttattattcatatttatctgtttt-tggaatttcattcagGCTTGGCACTTATTACCATGAATGAAGCACGGTTATGGACCGATGGACGATACTTCTTGCAGGCATCACAGGAGCTAAGCGACCAGTGGAAACTCATGCG
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-gctatgccgtgggtggtctttgtgtatttcaaacatgatgaaatcagctaggtgtgtctttttgcgttcgttttttcattttttgttaaatggaattcagGCTTGGCACTTATAACAAAGAATGAAGCACTGCTGTGGACGGATGGACGATATTTTTTGCAGGCTGAGCAAGAACTTAGTGCTCAGTGGAAGCTTATGCG
upper sequence: Vv04s0023g01300.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G38410.3 (Glycine max), 3'ss of exon 2
--atttctgaacctgatcaccttagttggattaaattacgattaacttagcctggtgtttttcttattattcatatttatctgtttttgg-aatttcattcagGCTTGGCACTTATTACCATGAATGAAGCACGGTTATGGACCGATGGACGATACTTCTTGCAGGCATCACAGGAGCTAAGCGACCAGTGGAAACTCATGCG
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tccatgccgtgtgtg-tggtctttgtgtttttcaaacccgatgaaatcagccaggtgtctttttg--tgatggtattttcatttttttaacaacgcaattcagGCTTGGCACTTATAACAAAGAAAGAAGCACTGCTGTGGACGGATGGACGGTATTTTTTGCAGGCTGAGAAAGAACTTAGTGCTGGGTGGAAGCTAATGCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagcctggtgtttttcttattattcatatttatctgtttttggaatttcattcagGCTTGGCACTTATTACCATGAATGAAGCACGGTTATGGACCGATGGACGATACTTCTTGCAGGCATCACAGGAGCTAAGCGACCAGTGGAAACTCATGCG
tttcattc CT-rich tract
tttttcttattattca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atttctgaacctgatcaccttagttggattaaattacgattaacttagcctggtgtttttcttattattcatatttatctgtttttggaatttcattcagGCTTGGCACTTATTACCATGAATGAAGCACGGTTATGGACCGATGGACGATACTTCTTGCAGGCATCACAGGAGCTAAGCGACCAGTGGAAACTCATGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - ctgaacc
- - - - - - - -cacctta
- - - - - - - - - - - - - - - - - - - - - - - agcctgg