1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttgatgatagccttggtgacagaacatagaaacagcatgttaaatgacatacttgctggcttatgtcagtgtttgttgatttggccctatcctgttgcagGAACAGTTTGTTAGATAAAAGCAAAGCCAGTTCAGTGTCAGTTTGGCTGGAGTCTTGGACAGCCACCAAAGCTGTTATAAAAGTGCAAACATTTCAGATC
species | Vitis vinifera |
transcript | Vv04s0023g01270.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAAGAAGAACAGTTAACATTACACATGATAGTGGTGAGAACTCTGACAG GAACAGTTTGTTAGATAAAAGCAGAGCCAGTTCAGTGTCAGTTTGGCTGGA
genomic: CCAAGAAGAACAATTAACATTACACATGATAGTGGTGAGAACTCTGACAGgtactgattg ... cctgttgcagGAACAGTTTGTTAGATAAAAGCAAAGCCAGTTCAGTGTCAGTTTGGCTGGA
gacatacttgctggcttatgtcagtgtttgttgatttggccctatcctgttgcagGAACAGTTTGTTAGATAAAAGCAAAGCCAGTTCAGTGTCAGTTTGGCTGGAGTCTTGGACAGCCACCAAAGCTGTTATAAAAGTGCAAACATTTCAGATC
tgttgat putative branch site (score: 4)
ccctatcct putative PPT
ttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgatgatagccttggtgacagaacatagaaacagcatgttaaatgacatacttgctggcttatgtcagtgtttgttgatttggccctatcctgttgcagGAACAGTTTGTTAGATAAAAGCAAAGCCAGTTCAGTGTCAGTTTGGCTGGAGTCTTGGACAGCCACCAAAGCTGTTATAAAAGTGCAAACATTTCAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - agccttg
- - - - - - - - - acagaac
- - - - - - - - - - - - - - gaaacag
- - - - - - - - - - - - - - - - - -catgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - ttgctgg