1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtccagtactggtcattcctaagctccattcaaatgatttatggtatataccagtttgcttattagtagaatggaactggaactttctttctaattgcagGACCCAGTTAGAAGTTTTACGGGTCGTGAGAAGTACAAGAGACGGCTATGGGTGACCGATGCACTAGATGATCCGTCTGTG
species | Vitis vinifera |
transcript | Vv04s0023g00720.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGAAGGCAACCGCGCCCTGGGAACCTTTGCGGTTTCAGTCAAGTACAAG GACCCAGTTAGAAGTTTTACGGGTCGTGAGAAGTACAAGAGACGGCTATGGEST: gi|26267476|gb|CA818539.1|CA818539
genomic: GTGAAGGCAACCGCGCCCTGGGAACCTTTGCGGTTTCAGTCAAGTACAAGgtatccctag ... ctaattgcagGACCCAGTTAGAAGTTTTACGGGTCGTGAGAAGTACAAGAGACGGCTATGG
EST: GTGAAGGCAACCGCGCCCTGGGAACCTTTGCGGTTTCAGTCAAGTACAAG GACCCAGTTAGAAGTTTTACGGGTCGTGAGAAGTACAAGAGACGGCTATGGEST: gi|110422118|gb|EC988430.1|EC988430
genomic: GTGAAGGCAACCGCGCCCTGGGAACCTTTGCGGTTTCAGTCAAGTACAAGgtatccctag ... ctaattgcagGACCCAGTTAGAAGTTTTACGGGTCGTGAGAAGTACAAGAGACGGCTATGG
EST: GTGAAGGCAACCGCGCCCTGGGAACCTTTGCGGTTTCAGTCAAGTACAAG GACCCAGTTAGAAGTTTTACGGGTCGTGAGAAGTACAAGAGACGGCTATGG
genomic: GTGAAGGCAACCGCGCCCTGGGAACCTTTGCGGTTTCAGTCAAGTACAAGgtatccctag ... ctaattgcagGACCCAGTTAGAAGTTTTACGGGTCGTGAGAAGTACAAGAGACGGCTATGG
atataccagtttgcttattagtagaatggaactggaactttctttctaattgcagGACCCAGTTAGAAGTTTTACGGGTCGTGAGAAGTACAAGAGACGGCTATGGGTGACCGATGCACTAGATGATCCGTCTGTG
ttctaat putative branch site (score: 2)
ctttctttctaatt CT-rich tract
ttattagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccagtactggtcattcctaagctccattcaaatgatttatggtatataccagtttgcttattagtagaatggaactggaactttctttctaattgcagGACCCAGTTAGAAGTTTTACGGGTCGTGAGAAGTACAAGAGACGGCTATGGGTGACCGATGCACTAGATGATCCGTCTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - tcattcc
- - - - - - - - - - - - -ccattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatggaa