1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tggtttagaatctatatgtattgaaagtttttacttatatgctcatgtttattctttctctgcatggatgttatacgtttgtataaatttctgggcacagATTGTTCTGGAGGACCTTGAGGTTGAAACTACAGGAGACAAGAAGGACCCTGATTCTATTAGTCTTGATCTCAGTTTGGATTCCGGTCTTGGAGTTTTTG
species | Vitis vinifera |
transcript | Vv04s0023g00380.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAG ATTGTTCTGGAGGACCTTGAGGTTGAAACTACAGGAGACAAGAAGGACCCTEST: gi|30303671|gb|CB980465.1|CB980465
genomic: GGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAGgtgattactc ... ctgggcacagATTGTTCTGGAGGACCTTGAGGTTGAAACTACAGGAGACAAGAAGGACCCT
EST: GGCGTAGC-AG ATTGTTCTGGAGGACCTTGAGGTTGAAACTACAGGAGACAAGAAGGTCCCTEST: gi|71867156|gb|DT016211.1|DT016211
genomic: GGCGTAGCAAGgtgattactc ... ctgggcacagATTGTTCTGGAGGACCTTGAGGTTGAAACTACAGGAGACAAGAAGGACCCT
EST: GGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAG ATTGTTCTGGAGGACCTTGAGGTTGAAACTACAGGAGACAAGAAGGACCCTEST: gi|161715778|gb|FC066182.1|FC066182
genomic: GGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAGgtgattactc ... ctgggcacagATTGTTCTGGAGGACCTTGAGGTTGAAACTACAGGAGACAAGAAGGACCCT
EST: GGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAG ATTGTTCTGGAGGACCTTGAGGTTGAAACTACAGGAGACAAGAAGGACCCTEST: gi|294966027|gb|GW837394.1|GW837394
genomic: GGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAGgtgattactc ... ctgggcacagATTGTTCTGGAGGACCTTGAGGTTGAAACTACAGGAGACAAGAAGGACCCT
EST: GGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAG ATTGTTCTGGAGGACCTTGAGGTTGAAACTACAGGAGACAAGAAGGACCCTEST: gi|77584187|gb|DV221146.1|DV221146
genomic: GGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAGgtgattactc ... ctgggcacagATTGTTCTGGAGGACCTTGAGGTTGAAACTACAGGAGACAAGAAGGACCCT
EST: GGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAG ATTGTTCTGGAGGACCTTGAGGTTGAAACTACAGGAGACAAGAAGGACCCTEST: gi|110685575|gb|EE062425.1|EE062425
genomic: GGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAGgtgattactc ... ctgggcacagATTGTTCTGGAGGACCTTGAGGTTGAAACTACAGGAGACAAGAAGGACCCT
EST: GGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAG ATTGTTCTGGAGGACCTTGAGGTTGAAACTACAGGAGACAAGAAGGACCCT
genomic: GGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAGgtgattactc ... ctgggcacagATTGTTCTGGAGGACCTTGAGGTTGAAACTACAGGAGACAAGAAGGACCCT
tgtttattctttctctgcatggatgttatacgtttgtataaatttctgggcacagATTGTTCTGGAGGACCTTGAGGTTGAAACTACAGGAGACAAGAAGGACCCTGATTCTATTAGTCTTGATCTCAGTTTGGATTCCGGTCTTGGAGTTTTTG
tttct CT-rich tract
tttgtataaatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtttagaatctatatgtattgaaagtttttacttatatgctcatgtttattctttctctgcatggatgttatacgtttgtataaatttctgggcacagATTGTTCTGGAGGACCTTGAGGTTGAAACTACAGGAGACAAGAAGGACCCTGATTCTATTAGTCTTGATCTCAGTTTGGATTCCGGTCTTGGAGTTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - -tatgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgga