Sequence
atgc intronic sequence ATGC exonic sequence...ctaattcaaatagagcagcatgtttctgtatgtacacatgtgcatttacacacatacatgctcatgtttcctctaaacttaaccttgattgataatctagGCTATTGCCACTGCAAGGATGAAAGGAGAGTTCCCGGAGAGAATGGGACAGCCAGAATGTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g00370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os01g68860.3 (Oryza sativa), 3'ss of exon 2
ctaattcaaatagagcagcatgtttctgtatgtacacatgtgcatttacacacata-catgctcatgtt-tcctctaaacttaaccttgattgataatctagGCTATTGCCACTGCAAGGATGAAAGGAGAGTTCCCGGAGAGAATGGGACAGCCAGAATGTCAG
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tttctgtaaattatatcttatattcaattctgatcgttttatcttttcttcatacctcatgtttttattctcaagttagattggatctgtttaatg--ttagGCTATTGCCTCTGCCAGAATGAAAGGAGAATACCCTGAGAGGATGGGGCAACCAGAATGTCAG
upper sequence: Vv04s0023g00370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G107491_T03 (Zea mays), 3'ss of exon 2
ctaattcaaatagagcagcatgtttctgtatgtacacatgtgcatttaca-cacatacatgctcatgtt-tcctctaaacttaaccttgattgataatctagGCTATTGCCACTGCAAGGATGAAAGGAGAGTTCCCGGAGAGAATGGGACAGCCAGAATGTCAG
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tgcttccttgcaaatttacgtctttatttaactaatcattgttttttacttcatataccattttttgttctcaagttaggttgaatctgtttaat--tttagGCTATTGCCTCTGCCAGAATGAAGGGAGAATATCCTGAGAGAGTGGGACAGCCAGAGTGTCAG
upper sequence: Vv04s0023g00370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G36140.1 (Glycine max), 3'ss of exon 2
ctaattcaaatagagcagcatgtttctgtatgtacac-atgtgcatttacacacatacatgctcatgtttcctctaaact-taaccttgattgataatct----agGCTATTGCCACTGCAAGGATGAAAGGAGAGTTCCCGGAGAGAATGGGACAGCCAGAATGTCAG
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------tatataatgttgaatcttactgggccttgatgatttttatttcgattcttttacgtggagaatataaatacctgatatgttttatcgatgatcctatcagGCTATTGCCACTGCAAGGATGATAGGCGAGTTCCCAGAAAGAATAGGGCAACCAGAATGCCAG
upper sequence: Vv04s0023g00370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G31370.2 (Glycine max), 3'ss of exon 1
---ctaattcaaatagagcagcatgtttctgtatgtacacatgtgcatttacacacatacatgctcatgtttcctctaaacttaaccttgattgataatctagGCTATTGCCACTGCAAGGATGAAAGGAGAGTTCCCGGAGAGAATGGGACAGCCAGAATGTCAG
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atgttgaatcttactgtgctgt-tgatgatttttatttcgatat-cattcttttatatgaagaat-ataaatacctgatatgttttgtcgatgatcttatcagGCTATTGCCACTGCAAGGATGATAGGCGAGTTCCCAGAAAGAATAGGGCAACCAGAATGCCAG
upper sequence: Vv04s0023g00370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G47660.1 (Glycine max), 3'ss of exon 2
-----ctaattcaa-atagagcagcatgtttctgtatgtacacatgtgcatttacacacatacatgctcatgtttcctctaaacttaaccttgattgataatctagGCTATTGCCACTGCAAGGATGAAAGGAGAGTTCCCGGAGAGAATGGGACAGCCAGAATGTCAG-
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agtaactatcctgctgtactgttggtactttcatttcggtcacacat-tatttattaaatcatata-----gttacctgatagttttttctttgaaaactatc-aggCTATTGCCGCTGCAAGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGG
upper sequence: Vv04s0023g00370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G38650.2 (Glycine max), 3'ss of exon 2
---------------ctaattcaaatagagcag-catgtttctgt-atgtaca----catgtgcatttacacacatacat-gctcatgtttcctctaaacttaacc---------ttgattgataatc--tagGCTATTGCCACTGCAAGGATGAAAGGAGAGTTCCCGGAGAGAATGGGACAGCCAGAATGTCAG
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tttagctgtttttacctatttttcaaaaaataatcttgttactgtgatgtatatggtcaaaagtaactatcttgctgtattgttggtacttttcatatagTTACCTGATAGTTTTTTCTTTGAAAACTATCAGGCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAG
upper sequence: Vv04s0023g00370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G38650.1 (Glycine max), 3'ss of exon 2
ctaattcaaatagagcagcatgtttctgtatgtacacatgtgcatttacacacatacatgctcat---gtttcctctaaacttaaccttgattgataatctagGCTATTGCCACTGCAAGGATGAAAGGAGAGTTCCCGGAGAGAATGGGACAGCCAGAATGTCAG
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--tcttgttactgtgatgtatatggtcaaaagtaactatcttgctgtattgttggtacttttcatatagttacctgatagttttttctttgaaaactatc-agGCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110384276|gb|EC948703.1|EC948703EST: GTAGATTTGGGATAACTTGCCGGTTTAATCATCCTCCCAATAGAAAACTG GCTATTGCCACTGCAAGGATGAAAGGAGAGTTCCCGGAGAGAATGGGACAG
genomic: GTAGATTTGGGATAACTTGCCGGTTTAATCATCCTCCCAATAGAAAACTGgtaaaaaaat ... gataatctagGCTATTGCCACTGCAAGGATGAAAGGAGAGTTCCCGGAGAGAATGGGACAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttacacacatacatgctcatgtttcctctaaacttaaccttgattgataatctagGCTATTGCCACTGCAAGGATGAAAGGAGAGTTCCCGGAGAGAATGGGACAGCCAGAATGTCAG
taaacttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctaattcaaatagagcagcatgtttctgtatgtacacatgtgcatttacacacatacatgctcatgtttcctctaaacttaaccttgattgataatctagGCTATTGCCACTGCAAGGATGAAAGGAGAGTTCCCGGAGAGAATGGGACAGCCAGAATGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - -aaataga
- - - - - - - - -gcatgtt
- - - - - - - - - - - - -ctgtatg
- - - - - - - - - - - - - - - - -acacatg
- - - - - - - - - - - - - - - - - - - - - - - -acacaca