1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cctacattttctcatcagccataaggagggtgtgtattggtgatgtttgttttactttttacctctggttaacatttttttcgtgtttcttggctgatagAGACCAAAAGTTCTTACAGTTGAAGACAAGCTGATGGTATTAGGATGCAA
species | Vitis vinifera |
transcript | Vv04s0008g06480.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGAGAACAGAAATATACTAGCTAACCTTCTAATGAAGAATACTGTCCGG AGACCAAAAGTEST: gi|71856228|gb|DT005283.1|DT005283
genomic: CAGAGAACAGAAATATACTAGCTAACCTTCTTATGAAGAATTCTGTCCGGgtttgttttc ... tggctgatagAGACCAAAAGT
EST: CAGAGAACAGAAATATACTAGCTAACCTTCTTATGAAGAATTCTGTCCGG AGACCAAAAGTTCTTACAGTTGAAGACAAGCTGACGGTATTAGGATGCAA
genomic: CAGAGAACAGAAATATACTAGCTAACCTTCTTATGAAGAATTCTGTCCGGgtttgttttc ... tggctgatagAGACCAAAAGTTCTTACAGTTGAAGACAAGCTGATGGTATTAGGATGCAA
tttgttttactttttacctctggttaacatttttttcgtgtttcttggctgatagAGACCAAAAGTTCTTACAGTTGAAGACAAGCTGATGGTATTAGGATGCAA
ggttaac putative branch site (score: 3)
tttttttcgtgtttct CT-rich tract
ttaacattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctacattttctcatcagccataaggagggtgtgtattggtgatgtttgttttactttttacctctggttaacatttttttcgtgtttcttggctgatagAGACCAAAAGTTCTTACAGTTGAAGACAAGCTGATGGTATTAGGATGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
cctacat
- - - - - - catcagc
- - - - - - - - - - ataagga
- - - - - - - - - - - - - -gggtgtg
- - - - - - - - - - - - - - - - - - - ggtgatg