1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgatcatcatcgccacttgaatgtctggtcactgatatttagctttttcttgcctaaaagacttgaaactctgtactgaatcagtggcttttgtgaacagACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAGCTAACTGAATTGCTATCAATCATGTGTGAGAATTACAATGCTTTGCACA
species | Vitis vinifera |
transcript | Vv04s0008g05760.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGAC ACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAGEST: gi|71863063|gb|DT012118.1|DT012118
genomic: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGACgtgagttttc ... ttgtgaacagACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAG
EST: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGAC ACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAGEST: gi|37189518|gb|CF608867.1|CF608867
genomic: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGACgtgagttttc ... ttgtgaacagACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAG
EST: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGAC ACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAGEST: gi|29785116|gb|CB341851.2|CB341851
genomic: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGACgtgagttttc ... ttgtgaacagACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAG
EST: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGAC ACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAGEST: gi|28963677|gb|CB342710.1|CB342710
genomic: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGACgtgagttttc ... ttgtgaacagACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAG
EST: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGAC ACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAGEST: gi|37189569|gb|CF608918.1|CF608918
genomic: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGACgtgagttttc ... ttgtgaacagACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAG
EST: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAA-AC ACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAGEST: gi|71859000|gb|DT008055.1|DT008055
genomic: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGACgtgagttttc ... ttgtgaacagACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAG
EST: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGAC ACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAGEST: gi|161716070|gb|FC069125.1|FC069125
genomic: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGACgtgagttttc ... ttgtgaacagACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAG
EST: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGAC ACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAGEST: gi|71862553|gb|DT011608.1|DT011608
genomic: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGACgtgagttttc ... ttgtgaacagACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAG
EST: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGAC ACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAGEST: gi|71861352|gb|DT010407.1|DT010407
genomic: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGACgtgagttttc ... ttgtgaacagACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAG
EST: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGAC ACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAGEST: gi|110703174|gb|EE079787.1|EE079787
genomic: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGACgtgagttttc ... ttgtgaacagACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAG
EST: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGAC ACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAGEST: gi|71862955|gb|DT012010.1|DT012010
genomic: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGACgtgagttttc ... ttgtgaacagACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAG
EST: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGAC ACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAGEST: gi|71860157|gb|DT009212.1|DT009212
genomic: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGACgtgagttttc ... ttgtgaacagACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAG
EST: GTGTGGATGTGGATGTGGAAAGGAAGCCCTCTCCAGTATTGAAAGAAGAC ACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAG
genomic: GTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGACgtgagttttc ... ttgtgaacagACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAG
tttcttgcctaaaagacttgaaactctgtactgaatcagtggcttttgtgaacagACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAGCTAACTGAATTGCTATCAATCATGTGTGAGAATTACAATGCTTTGCACA
gcctaaa putative branch site (score: 3)
cttttgt putative PPT
taaaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatcatcatcgccacttgaatgtctggtcactgatatttagctttttcttgcctaaaagacttgaaactctgtactgaatcagtggcttttgtgaacagACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAGCTAACTGAATTGCTATCAATCATGTGTGAGAATTACAATGCTTTGCACA
- - catcatc
- - - - - -gccactt
- - - - - - - - - gaatgtc
- - - - - - - - - - - - - -gtcactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctgta