1 5' 3' | 2 5' 3' | 3 5' 3' |
...agttgtagcatatttcattcaaatatgttatgttcattcaaatatgttgtagtgtataaaggcagttgaagacattctatttggtcttttgatttgacagGTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGATCGCTTGGAGTTGCTGGTTGATAAAACTGCTAATATGCAAGGAAATACAT
species | Vitis vinifera |
transcript | Vv04s0008g05650.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGATCCAAATGCAGATAGGATAAACCGGTTAAAAGGTGAAATGGGTCAG GTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGATEST: gi|30252438|gb|CB969989.1|CB969989
genomic: ATGATCCAAATGCAGATAGGATAAACCGGTTAAAAGGTGAAATGGGTCAGgtgagttttt ... gatttgacagGTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGAT
EST: ATGATCCAAATGCAGATAGGATAAACCGGTTAAAAGGTGAAATGGGTCAG GTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGATEST: gi|351034506|gb|FQ448182.1|FQ448182
genomic: ATGATCCAAATGCAGATAGGATAAACCGGTTAAAAGGTGAAATGGGTCAGgtgagttttt ... gatttgacagGTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGAT
EST: ATGATCCAAATGCAGATAGGATAAACCGGTTAAAAGGTGAAATGGGTCAG GTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGATEST: gi|161718558|gb|FC065383.1|FC065383
genomic: ATGATCCAAATGCAGATAGGATAAACCGGTTAAAAGGTGAAATGGGTCAGgtgagttttt ... gatttgacagGTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGAT
EST: ATGATCCAAATGCAGATAGGATAAACCGGTTAAAAGGTGAAATGGGTCAG GTACGCA-TGTCATGATAGAGA-TATTGATAAAGTTT-AGACAGAG-T-ATEST: gi|161715759|gb|FC066163.1|FC066163
genomic: ATGATCCAAATGCAGATAGGATAAACCGGTTAAAAGGTGAAATGGGTCAGgtgagttttt ... gatttgacagGTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGAT
EST: ATGATCCCAATGCAGATAGGATAAACCGGTTAAAAGGTGAAATGGGTCAG GTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGATEST: gi|27586637|gb|CB009332.1|CB009332
genomic: ATGATCCAAATGCAGATAGGATAAACCGGTTAAAAGGTGAAATGGGTCAGgtgagttttt ... gatttgacagGTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGAT
EST: ATGATCCAAATGCAGATAGGATAAACCGGTTAAAAGGTGAAATGGGTCAG GTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGATEST: gi|27584778|gb|CB007473.1|CB007473
genomic: ATGATCCAAATGCAGATAGGATAAACCGGTTAAAAGGTGAAATGGGTCAGgtgagttttt ... gatttgacagGTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGAT
EST: ATGATCCAAATGCAGATAGGATAAACCGGTTAAAAGGTGAAATGGGTCAG GTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGATEST: gi|351029819|gb|FQ427659.1|FQ427659
genomic: ATGATCCAAATGCAGATAGGATAAACCGGTTAAAAGGTGAAATGGGTCAGgtgagttttt ... gatttgacagGTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGAT
EST: ATGATCCAAATGCAGATAGGATAAACCGGTTAAAAGGTGAAATGGGTCAG GTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGATEST: gi|349808751|gb|FQ406601.1|FQ406601
genomic: ATGATCCAAATGCAGATAGGATAAACCGGTTAAAAGGTGAAATGGGTCAGgtgagttttt ... gatttgacagGTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGAT
EST: ATGATCCAAATGCAGATAGGATAAACCGGTTAAAAGGTGAAATGGGTCAG GTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGATEST: gi|110690970|gb|EE068536.1|EE068536
genomic: ATGATCCAAATGCAGATAGGATAAACCGGTTAAAAGGTGAAATGGGTCAGgtgagttttt ... gatttgacagGTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGAT
EST: ATGATCCAAATGCAGATAGGATAAACCGGTTAAAAGGTGAAATGGGTCAG GTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGAT
genomic: ATGATCCAAATGCAGATAGGATAAACCGGTTAAAAGGTGAAATGGGTCAGgtgagttttt ... gatttgacagGTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGAT
gttgtagtgtataaaggcagttgaagacattctatttggtcttttgatttgacagGTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGATCGCTTGGAGTTGCTGGTTGATAAAACTGCTAATATGCAAGGAAATACAT
ttttgat putative branch site (score: 4)
tcttttg CT-rich tract
attctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttgtagcatatttcattcaaatatgttatgttcattcaaatatgttgtagtgtataaaggcagttgaagacattctatttggtcttttgatttgacagGTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGATCGCTTGGAGTTGCTGGTTGATAAAACTGCTAATATGCAAGGAAATACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- -tgtagca
- - - - - - - -cattcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaca