Sequence
atgc intronic sequence ATGC exonic sequence...agagatgaagcagttcagttgttctatgcaaaaatatgtggtgatactttaccagttatagctagatgcatgtttctatattaactttcttgatatacagTTTTACAGGGTTCAGGTTGGTGTACAATCACCAGAAGGGATTACAACTATGCGGGGGGTATTAAGAAGATTCAATGACTTCTTGAAGTTATTTACTGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g05630.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G06980.1 (Glycine max), 3'ss of exon 2
agagatgaagcagttcagttgttctatgcaaaaatatgtggtgatactttacc-agttatagctaga-tgcatgt-ttctatattaactttcttgatatacagTTTTACAGGGTTCAGGTTGGTGTACAATCACCAGAAGGGATTACAACTATGCGGGGGGTATTAAGAAGATTCAATGACTTCTTGAAGTTATTTACTGAT
|| || || ||| | ||| | | | || | | |||||| || || ||| | ||||| | || | |||||| ||||||||||| ||||||||||| ||||| ||||||||||||| | | || || || ||||| |||||||| || | ||||| ||| |||||
---aattaattgtttacagatttccacatttcaatcatttatagtttgttgtggaataatagcttctctgtgagtgttcatttttaacatcattaagggacagTTCTACAGGGTTCAAGTTGGTGTACAGTCACCGGAAGGGATTACAAAGGTCCATGGAGTCTTGAGAAGGTTCAATGATTTTCTAAAGTTGTTTGCTGAT
upper sequence: Vv04s0008g05630.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G07080.1 (Glycine max), 3'ss of exon 2
-----agagatgaagcagttcagttgttctatgcaaaaatatgtggtgatactttaccagttatagctagatgcatgtttctatattaactttcttgatatacagTTTTACAGGGTTCAGGTTGGTGTACAATCACCAGAAGGGATTACAACTATGCGGGGGGTATTAAGAAGATTCAATGACTTCTTGAAGTTATTTACTGAT
| | | | | |||| || || || |||| | || | || || | || || |||| | | ||||| | || | |||||| ||||||||||| ||||||||||| ||||| ||||| ||||||| | | || || |||||||| |||||||| || | ||||| ||| |||||
aattaattgtttacagatttcaac-atttcattcatttatattttgttgtggaataatagctt---ctctgtgagtgttcattt-ttaacatcattaagggacagTTCTACAGGGTTCAAGTTGGTGTACAGTCACCGGAAGGAATTACAAAGGTCCATGGAGTCTTAAGAAGGTTCAATGATTTTCTAAAGTTGTTTGCTGAT
upper sequence: Vv04s0008g05630.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G25350.1 (Arabidopsis thaliana), 3'ss of exon 2
----------------------------agagatgaagcagttcagttgtt-----ctatgcaaaaatatgtggtgatactttaccagttatagctagatgcatgt-ttctatat---taactttcttgatatacagTTTTACAGGGTTCAGGTTGGTGTACAATCACCAGAAGGGATTACAACTATGCGGGGGGTATTAAGAAGATTCAATGACTTCTTGAAGTTATTTACTGAT
| || | ||| | | | | | | | | || ||| || | ||| | || | | || |||| | || ||||||| |||||||||||||||||||||| |||| ||||| |||||||| ||| || ||||| || | | || ||||| ||||| || | ||| | || |||||
gtaaataagtttcgatctctctctctacacagtgtagatttttctatagctagttgttgttcttatcgaagttgtgtattttcgtgaactattccaaggaactcttgctcgatatatgtgacattcttgaggtacagTTTTACAGGGTTCAGGTAAGTGTGCAATCTCCAGAAGGTGTTAGCACAATGCGAGGAATTCTGAGGAGATTTAATGATTTTGTAAAGCTTTTAGCTGAT
upper sequence: Vv04s0008g05630.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G32160.1 (Arabidopsis thaliana), 3'ss of exon 2
---agagatgaagcagttcagttgttctatgcaaaaatatgtggtgatactttaccagttatagctagatgcatgtttctatat-taactttcttgatatacagTTTTACAGGGTTCAGGTTGGTGTACAATCACCAGAAGGGATTACAACTATGCGGGGGGTATTAAGAAGATTCAATGACTTCTTGAAGTTATTTACTGAT
| | || | | | ||| ||| |||| | | | | ||| | |||| | | | || || |||| |||| || | ||| ||||||||||||||||||||| |||| ||||| || ||||| ||||| || ||||| || || || ||| |||| ||||| || | ||| |||| || |||
ttttgtttttttgctgctgaagagttttattgctgtgcatgtcat-acgttattccaat-atagttgaa--cttgcttacatatataacattttagatgaacagTTTTACAGGGTTCAGGTAAGTGTGCAATCCCCTGAAGGTATTACCACAATGCGAGGAGTGTTGAGACGATTTAATGATTTTCTAAAGCTATTAACGGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actttaccagttatagctagatgcatgtttctatattaactttcttgatatacagTTTTACAGGGTTCAGGTTGGTGTACAATCACCAGAAGGGATTACAACTATGCGGGGGGTATTAAGAAGATTCAATGACTTCTTGAAGTTATTTACTGAT
ctttctt CT-rich tract
tatattaactttcttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agagatgaagcagttcagttgttctatgcaaaaatatgtggtgatactttaccagttatagctagatgcatgtttctatattaactttcttgatatacagTTTTACAGGGTTCAGGTTGGTGTACAATCACCAGAAGGGATTACAACTATGCGGGGGGTATTAAGAAGATTCAATGACTTCTTGAAGTTATTTACTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - -tgaagca
- - - - - - - - - - - tctatgc
- - - - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - tgtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgtt