Sequence
atgc intronic sequence ATGC exonic sequence...taattgttttattttaaggacattgaaaattttgggttaatatggattcttaacatttgaatgaatttattccctcatttctattttgtttctgctgcagATAATATGTTCATGTTCTTTTCTCTATGCATTGAGACGCTGGAAGATTATTTCTTTCACACTTGGTGAATCTTCAAATGTTAATGATGGTTCCCCAGTTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g05570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G07030.1 (Glycine max), 3'ss of exon 2
taattgttttattttaaggacattgaaaattttgggttaatatggattcttaacatttgaatgaatttattccctcatttctattttgtttctgctgcagATAATATGTTCATGTTCTTTTCTCTATGCATTGAGACGCTGGAAGATTATTTCTTTCACACTTGGTGAATCTTCAAATGTTAATGATGGTTCC--CCAGTTT------------------------------------------------------------
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---------------------------------------------------------------tttttatatattattctatacttc-ttaccactgcagatggtatgttcatgttgttttctttatgtattgaggcactggaggataatttctttcatagcagGCGAATCAGTAATTATGGCAGATAACTCAAATGGATTTGTTCCACTGAGGACTTTGAAGCACACTCTTTCTTTGGCAGGAGCTTATTTACTTTACATG
upper sequence: Vv04s0008g05570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G32030.1 (Glycine max), 3'ss of exon 2
taattgttttattttaaggacattgaaaattttgggttaatatggattcttaacatttgaatgaattta----ttccctcatttctattttgtttctgctgcagATAATATGTTCATGTTCTTTTCTCTATGCATTGAGACGCTGGAAGATTATTTCTTTCACACTTGGTGAATCTTCAAATGTTAATGATGGTTCCCCAGTTT
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---tctattggccactaaggccttacaattgtcaatctattgttgtgaagatccacttgattcatttcacaattttaaacaatcttctattgttttt-ctgcagATGGTATGTTCGTGTTGCTTTCTCTATTTATTGAGACGCTGGAGGATGATTTCTTTCTCAACAGGTGAATCCTTACACATATCAGATAACTCGACAAAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352768139|gb|FQ467278.1|FQ467278EST: CCCTTTCTTCTTATCATTTCCCTTGTGCAAGTGTCATCACACTCTTTCAG ATAATATGTTCATGTTCTTTTCTCTATGCATTGAGACGCTGGAAGATTATT
genomic: CCCTTTCTTCTTATCATTTCCCTTGTGCAAGTGTCATCACACTCTTTCAGgtagattcct ... tctgctgcagATAATATGTTCATGTTCTTTTCTCTATGCATTGAGACGCTGGAAGATTATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attcttaacatttgaatgaatttattccctcatttctattttgtttctgctgcagATAATATGTTCATGTTCTTTTCTCTATGCATTGAGACGCTGGAAGATTATTTCTTTCACACTTGGTGAATCTTCAAATGTTAATGATGGTTCCCCAGTTT
tcttaac putative branch site (score: 2)
tttattccctcatttc putative PPT
taacatttgaatgaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taattgttttattttaaggacattgaaaattttgggttaatatggattcttaacatttgaatgaatttattccctcatttctattttgtttctgctgcagATAATATGTTCATGTTCTTTTCTCTATGCATTGAGACGCTGGAAGATTATTTCTTTCACACTTGGTGAATCTTCAAATGTTAATGATGGTTCCCCAGTTT
- - - - - - - - - - - - gaaaatt