1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtcgggtgtgtgattggttcttctgattttttctggtggtctgctgtatataatatgtttcgactgcagacttatatgcttctcttacttttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
species | Vitis vinifera |
transcript | Vv04s0008g05000.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTCEST: gi|110422668|gb|EC988995.1|EC988995
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTCEST: gi|34320043|gb|CF372797.1|CF372797
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTCEST: gi|110691335|gb|EE069317.1|EE069317
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTCEST: gi|71862342|gb|DT011397.1|DT011397
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTGGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTTEST: gi|110410838|gb|EC976532.1|EC976532
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTCEST: gi|71856242|gb|DT005297.1|DT005297
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTCEST: gi|30136290|gb|CB921628.1|CB921628
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTCEST: gi|27586796|gb|CB009491.1|CB009491
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTCEST: gi|110709607|gb|EE085214.1|EE085214
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTCEST: gi|71876470|gb|DT025525.1|DT025525
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTCEST: gi|110373387|gb|EC937618.1|EC937618
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTCEST: gi|110708770|gb|EE086691.1|EE086691
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTCEST: gi|110373678|gb|EC937942.1|EC937942
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTCEST: gi|71866308|gb|DT015363.1|DT015363
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTCEST: gi|18459173|gb|BM437451.1|BM437451
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTCEST: gi|110715170|gb|EE092915.1|EE092915
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTCEST: gi|110377516|gb|EC942585.1|EC942585
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTCEST: gi|110425892|gb|EC992287.1|EC992287
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTCEST: gi|32245255|gb|CD711074.1|CD711074
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTCEST: gi|110402060|gb|EC968693.1|EC968693
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTCEST: gi|110362089|gb|EC925597.1|EC925597
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
EST: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAG GCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
genomic: GTGCCATAGACCTTTCCATGAAACACGAGTACCTAGCCGAGGATTTACAGgtatttttct ... ttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
gtatataatatgtttcgactgcagacttatatgcttctcttacttttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
ctcttac putative branch site (score: 3)
tatgcttctcttactt CT-rich tract
taatatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgggtgtgtgattggttcttctgattttttctggtggtctgctgtatataatatgtttcgactgcagacttatatgcttctcttacttttcttcacagGCCATGCAAACACCATTTAGGAGCTACCTTCAAGAGATGCTGGCTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- -gggtgtg
- - - - - tgattgg
- - - - - - - - - -cttctga
- - - - - - - - - - - - - - -tttctgg
- - - - - - - - - - - - - - - - - - - -tctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgcag