Sequence
atgc intronic sequence ATGC exonic sequence...gcaagcgccaaatcataaatctatggatgagaacttttcaccatcttcttttcccatgggtatgattgtttttcatgattgaaacttttgtttttgttagATGGGCACTTGAGCTCAGTTCAAACTCTAGCTTCTACTGCTATATGTGGAATCATCCACTCAATTTTCGGTGGGCAGCCTTTGTTGATTTTAGGAGTTGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g04980.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G051753_T01 (Zea mays), 3'ss of exon 3
gcaagcgccaaatcataaatctatggatgagaacttttcaccatcttcttttcccatgggtatgattgtttttcatgattgaaacttttgtttttg---ttagATGGGCACTTGAGCTCAGTTCAAACTCTAGCTTCTACTGCTATATGTGGAATCATCCACTCAATTTTCGGTGGGCAGCCTTTGTTGATTTTAGGAGTTGC
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--------------gtaaggcctcacctgg-----tgctactatgctagttaggcatgtataccattaaaata-gtaacaaaacagtatgtttttggttatagATGGAATACTCTCAACAGTTGAAACACTGGCATCGACTGCGATATGTGGCATCATACATTCAATTCTTGGAGGGCAGCCTTTGTTGATTGTTGGAGTTGC
upper sequence: Vv04s0008g04980.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G07480.1 (Glycine max), 3'ss of exon 3
gcaagcgccaaatcataaatctatggatgagaacttttcaccatcttcttttcccatgggtatgattgtttttcatgattgaaacttttgtttttgttagATGGGCACTTGAGCTCAGTTCAAACTCTAGCTTCTACTGCTATATGTGGAATCATCCACTCAATTTTCGGTGGGCAGCCTTTGTTGATTTTAGGAGTTGC------------------
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-------------------------------------------------------------------------------------gtgtttttttaacagatggaaccttgagcacagTGGAAACATTGGCATCTACTGCTATATGTGGAGTTGTTCACTCAATATTAGGTGGCCAACCTTTGTTGATTTTAGGAGTTGCTGAACCCACTGTCATAAT
upper sequence: Vv04s0008g04980.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G07390.1 (Glycine max), 3'ss of exon 2
-----------------gcaagcgccaaatcat-aaatctatgga-tgagaacttttcaccatcttcttttcccatgg-gtatgattgtttttca-tga---ttgaaacttttgtttttgttagATGGGCACTTGAGCTCAGTTCAAACTCTAGCTTCTACTGCTATATGTGGAATCATCCACTCAATTTTCGGTGGGCAGCCTTTGTTGATTTTAGGAGTTGC
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gtaaaacaatctcttttatgttttcaacaccctcaaacctttgagctaatggttgttttcagtttttggtggatataatgtttgatgttctgtaaatgagcttcaatatggtgttttttaacagATGGAACCTTGAGCACAGTGGAAACATTGGCATCTACTGCTATTTGTGGAGTTATTCACTCAATATTAGGTGGCCAACCTTTGTTGATTTTAGGAGTTGC
upper sequence: Vv04s0008g04980.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G25430.1 (Arabidopsis thaliana), 3'ss of exon 2
gcaagcgccaaatcataaatctatggatgagaacttttcaccatcttcttttcccatgggt-------atgattgtttttcatgattgaaactt---ttgtttttgttagATGGGCACTTGAGCTCAGTTCAAACTCTAGCTTCTACTGCTATATGTGGAATCATCCACTCAATTTTCGGTGGGCAGCCTTTGTTGATTTTAGGAGTTGC
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--------------gtatatatataaat---atttcttttccatgttgcttttttatgaatcgcctaaagaattaactttgatgatttttacttaacttgttgttgaaagGTGGAGCTCTAAGTGCAGTGGAAACATTAGCTTCTACTTCGATATGCGGAATCATCCATGCGATTTTCGGTGGACAACCATTGTTGATAGTTGGAGTTGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcttttcccatgggtatgattgtttttcatgattgaaacttttgtttttgttagATGGGCACTTGAGCTCAGTTCAAACTCTAGCTTCTACTGCTATATGTGGAATCATCCACTCAATTTTCGGTGGGCAGCCTTTGTTGATTTTAGGAGTTGC
cttttgtttttgtt CT-rich tract
aaacttttgttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcaagcgccaaatcataaatctatggatgagaacttttcaccatcttcttttcccatgggtatgattgtttttcatgattgaaacttttgtttttgttagATGGGCACTTGAGCTCAGTTCAAACTCTAGCTTCTACTGCTATATGTGGAATCATCCACTCAATTTTCGGTGGGCAGCCTTTGTTGATTTTAGGAGTTGC
gcaagcg
- - - -ccaaatc
- - - - - - - - - - ctatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgatt