Sequence
atgc intronic sequence ATGC exonic sequence...aatatcttggttgaatagtggagtttcttgaaaggggtatacctctgattctgtgtggaagttgtcatggtttcttgctgatccgattttcttgttacagTGGTGAAAAAGCATCTACAAAAGAGTGGCCTGGTTTTCTTGAGATCAAGGGAAGAGTCAGACTTGATGCATTTGAGAAGTTCCTCCAAGAGCTTCCTATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g04290.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G07700.1 (Glycine max), 3'ss of exon 6
aatatcttggttgaatagtggagtttcttgaaaggggtatacctctgattctgtgtggaagttgtcatggtttcttgctgatcc------gattttcttgttacagTGGTGAAAAAGCATCTACAAAAGAGTGGCCTGGTTTTCTTGAGATCAAGGGAAGAGTCAGACTTGATGCATTTGAGAAGTTCCTCCAAGAGCTTCCTATG
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---atttatattgaa-attatagttttgattttgatatgtactgttcaaa--gagtacttcttttcagtgattttttctgatcttacatgaatattctttgtgcagTGGTGAGAAAACTGCTGCTAAAGACTGGCCTGGGTTTCTCGAGATCAAGGGAAGGGTTCGACTTGATGCATTTGAGAAATTTCTGCAAGACCTTCGACAG
upper sequence: Vv04s0008g04290.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G07580.1 (Glycine max), 3'ss of exon 5
aatatcttggttgaatagtggagtttcttgaaagg-ggtatacctctgattctgtgtggaag---ttgtcatggtttcttgctgatcc------gattttcttgttacagTGGTGAAAAAGCATCTACAAAAGAGTGGCCTGGTTTTCTTGAGATCAAGGGAAGAGTCAGACTTGATGCATTTGAGAAGTTCCTCCAAGAGCTTCCTATG
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----------tttagagttggactggtttgggtggtggaccacttgccattatctttagagtacttcttcagtgattttttctgatcttacattaatattctttgtgaagTGGTGAGAAAACTGCTGCTGAAGACTGGCCTGGGTTTCTTGAGATCAAGGGAAGGGTGCGATGTGATGCATTTGAGAAATTTCTGCAAGACCTTCGACAG
upper sequence: Vv04s0008g04290.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G25640.1 (Arabidopsis thaliana), 3'ss of exon 2
aatatcttggttgaatagtggagtttcttgaaaggggtatacctctgattctgtgtggaagttgtcatggt--ttcttgctgatccgattttcttgtt--acagTGGTGAAAAAGCATCTACAAAAGAGTGGCCTGGTTTTCTTGAGATCAAGGGAAGAGTCAGACTTGATGCATTTGAGAAGTTCCTCCAAGAGCTTCCTATG
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-ctattctagt-gcttatc--agctctataaaatgtttttttaatgaatatggcttcgctgttattgataccatgtttaccaacctgatttttacgcttcacagTGGCGAAAAGACTACTACAAAAGAGTGGCCTATTTTGCTCGAGATTAAGGGTAGAGTCAGATTAGATGCATTTGAGAAGTTTGTTCGAGAGCTCCCAAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgattctgtgtggaagttgtcatggtttcttgctgatccgattttcttgttacagTGGTGAAAAAGCATCTACAAAAGAGTGGCCTGGTTTTCTTGAGATCAAGGGAAGAGTCAGACTTGATGCATTTGAGAAGTTCCTCCAAGAGCTTCCTATG
tgctgat putative branch site (score: 3)
ttttcttgtt putative PPT
attttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatatcttggttgaatagtggagtttcttgaaaggggtatacctctgattctgtgtggaagttgtcatggtttcttgctgatccgattttcttgttacagTGGTGAAAAAGCATCTACAAAAGAGTGGCCTGGTTTTCTTGAGATCAAGGGAAGAGTCAGACTTGATGCATTTGAGAAGTTCCTCCAAGAGCTTCCTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - -tggttga
- - - - - - - - - - - - - - - - - - - - -cctctga
- - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtcatgg