Sequence
atgc intronic sequence ATGC exonic sequence...gaatttggggacctttttttaaaaaaaaataatactggttttatgcaagttaatcattgtatatactgaaatcttatttcaatttgctttatgatgatagGCAGGTGAGCTTATGAAGCATGAGTATCAGAGGAAGGTTGCTTTGCTTAACAAGCAGAAGAAACGCAGTGCCAGTACTGAATCATTGGAGAAAACGAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g04200.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G074377_T01 (Zea mays), 3'ss of exon 2
gaatttggggacctttttttaaaaaaaaataatactggttttatgcaagttaatc--attgtatatact-gaaatcttatttcaatttg-ctttatgatgatagGCAGGTGAGCTTATGAAGCATGAGTATCAGAGGAAGGTTGCTTTGCTTAACAAGCAGAAGAAACGCAGTGCCAGTACTGAATCATTGGAGAAAACGAAAG
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---tatagttataaatttggcatcgatgcttgt-ttcatttgaagcatttaaactgtatggtttccacttggcttgttgctaaaatttgtccacatctgtatagGCTGGTGAGATTATGAAGCTTGAGTATCAGAGGAAGGTTGCTTTGTTAAATAGACAAAAGAAACACAATGCTGCCATTGAGGTTCTTGAGAAAACGAAAG
upper sequence: Vv04s0008g04200.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G08400.1 (Glycine max), 3'ss of exon 2
gaatttggggacc-tttttttaaaaaaaaataatac-tggttttatgcaagttaatcattgtatatactgaaatcttatttcaa--tttgctttatgatgatagGCAGGTGAGCTTATGAAGCATGAGTATCAGAGGAAGGTTGCTTTGCTTAACAAGCAGAAGAAACGCAGTGCCAGTACTGAATCATTGGAGAAAACGAAAG
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----gcatgcactattttctcatattttgttgatctatgattttctgagtcacgtcaaatgtttagagctgatttgtctacgaaatttcactccttgtcaacagCAAGGTGAGCTTATGAAGTTTGAATATCAGAGAAAAGTTGCAATTCTAAACAAGCAGAAGAAGCGTGGTGCCAGTGCTGAATCCTTAGAAAAGACTAAAG
upper sequence: Vv04s0008g04200.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G08520.1 (Glycine max), 3'ss of exon 2
gaatttggggacctttttttaaaaaaaaat-aatactggttttatgcaagttaatcattgtatatactgaaatcttatttcaa--tttgctttatgatgatagGCAGGTGAGCTTATGAAGCATGAGTATCAGAGGAAGGTTGCTTTGCTTAACAAGCAGAAGAAACGCAGTGCCAGTACTGAATCATTGGAGAAAACGAAAG
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---ttctcatatttgtattcatattttgttgaactatgattttctgagtcacgttgaatgtttagagctgatttttctatgaaatttctctccttgtcaacagCAAGGTGAGCTTATGAAGTTTGAATATCAGAGAAAAGTTGCAATTCTAAACAAGCAGAAGAAGCGTGGTGCCAGTGCTGAATCCTTAGAAAAGACTAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caagttaatcattgtatatactgaaatcttatttcaatttgctttatgatgatagGCAGGTGAGCTTATGAAGCATGAGTATCAGAGGAAGGTTGCTTTGCTTAACAAGCAGAAGAAACGCAGTGCCAGTACTGAATCATTGGAGAAAACGAAAG
agttaat putative branch site (score: 4)
aaatcttatttcaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaatttggggacctttttttaaaaaaaaataatactggttttatgcaagttaatcattgtatatactgaaatcttatttcaatttgctttatgatgatagGCAGGTGAGCTTATGAAGCATGAGTATCAGAGGAAGGTTGCTTTGCTTAACAAGCAGAAGAAACGCAGTGCCAGTACTGAATCATTGGAGAAAACGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - -atactgg
- - - - - - - - - - - - - - - - - - - - -tatgcaa