1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tggcacatcattgatacccaggaaatcatttattttttctctgttgtgggaacatattctgcattgattttcttgataatgcaatgatatgtttgtgaagGCCATTGAAAGGCTAAAAACAAGCCAAGAAAACCAAAAAAGCAAGCAGCAATACCTGGCCATGTATTCTAGCATTTTTGGTGGAATCACAACAGATAAAG
species | Vitis vinifera |
transcript | Vv04s0008g03730.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTCCACTCAAATAGCTGACGTTCCACTGTTGTCTTGTTTGGAG GCCATTGAAAGGCTAAAAACAAGCCAAGAAAACCAAAAAAGCAAGCAGCAAEST: gi|71855581|gb|DT004636.1|DT004636
genomic: ATTCCACTCAAATAGCTGATGTTCCACTGTTGTCTTGTTTGGAGgtttattttc ... gtttgtgaagGCCATTGAAAGGCTAAAAACAAGCCAAGAAAACCAAAAAAGCAAGCAGCAA
EST: ATTCCACTCAAATAGCTGATGTTCCACTGTTGTCTTGTTTGGAG GCCATTGAAAGGCTAAAAACAAGCCAAGAAAACCAAAAAAGCAAGCAGCAAEST: gi|46918679|gb|CN548008.1|CN548008
genomic: ATTCCACTCAAATAGCTGATGTTCCACTGTTGTCTTGTTTGGAGgtttattttc ... gtttgtgaagGCCATTGAAAGGCTAAAAACAAGCCAAGAAAACCAAAAAAGCAAGCAGCAA
EST: ATTCCACTCAAATAGCTGATGTTCCACTGTTGTCTTGTTTGGAG GCCATTGAAAGGCTAAAACCAAGCCAAGAAAEST: gi|161715879|gb|FC065498.1|FC065498
genomic: ATTCCACTCAAATAGCTGATGTTCCACTGTTGTCTTGTTTGGAGgtttattttc ... gtttgtgaagGCCATTGAAAGGCTAAAAACAAGCCAAGAAA
EST: ATTCCACTCAAATAGCTGATGTTCCACTGTTGTCTTGTTTGGAG GCCATTGAAAGGCTAAAAACAAGCCAAGAAAACCAAAAAAGCAAGCAGCAA
genomic: ATTCCACTCAAATAGCTGATGTTCCACTGTTGTCTTGTTTGGAGgtttattttc ... gtttgtgaagGCCATTGAAAGGCTAAAAACAAGCCAAGAAAACCAAAAAAGCAAGCAGCAA
gtgggaacatattctgcattgattttcttgataatgcaatgatatgtttgtgaagGCCATTGAAAGGCTAAAAACAAGCCAAGAAAACCAAAAAAGCAAGCAGCAATACCTGGCCATGTATTCTAGCATTTTTGGTGGAATCACAACAGATAAAG
tcttgat putative branch site (score: 4)
attttcttgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggcacatcattgatacccaggaaatcatttattttttctctgttgtgggaacatattctgcattgattttcttgataatgcaatgatatgtttgtgaagGCCATTGAAAGGCTAAAAACAAGCCAAGAAAACCAAAAAAGCAAGCAGCAATACCTGGCCATGTATTCTAGCATTTTTGGTGGAATCACAACAGATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- -cacatca
- - - - - - -ataccca
- - - - - - - - - - - aaatcat
- - - - - - - - - - - - - - - - - - - - - -ttgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcaa