1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ccttcagttgtagatttcattcaatcaattgttgcattctcctgcttgcctttatctgatagaggattaaattggttttgcttttgtctttctactatagCTATTGGAGACAGTCGTAAAAAACTGTGGAGATATTGTCCATATGCATGTAGCAGAGAGAGATATTCTTCATGAGATGGTGAAAATAGTAAAGAAAAAG
species | Vitis vinifera |
transcript | Vv04s0008g03720.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAAGCGCATTGGAAGTAAGAATCCAAAAGTTCAACTTCTTGCACTGACG CTATTGGAGACAGTCGTAAAAAACTGTGGAGATATTGTCCATATGCATGTAEST: gi|161707455|gb|FC055985.1|FC055985
genomic: AAAAGCGCATTGGAAGTAAGAATCCAAAAGTTCAACTTCTTGCACTGACGgtaagctcta ... tctactatagCTATTGGAGACAGTCGTAAAAAACTGTGGAGATATTGTCCATATGCATGTA
EST: AAAAGCGCATTGGAAGTAAGAATCCAAAAGTTCAACTTCTTGCACTGACG CTATTGGAGACAGTCGTAAAAAACTGTGGAEST: gi|18459792|gb|BM438070.1|BM438070
genomic: AAAAGCGCATTGGAAGTAAGAATCCAAAAGTTCAACTTCTTGCACTGACGgtaagctcta ... tctactatagCTATTGGAGACAGTCGTAAAAAACTGTGGA
EST: AAAAGCGCATTGGAAGTAAGAATCCAAAAGTTCAACTTCTTGCACTGACG CTATTGGAGACAGTCGTAAAAAACTGTGGAGATATTGTCCATATGCATGTA
genomic: AAAAGCGCATTGGAAGTAAGAATCCAAAAGTTCAACTTCTTGCACTGACGgtaagctcta ... tctactatagCTATTGGAGACAGTCGTAAAAAACTGTGGAGATATTGTCCATATGCATGTA
ttgcctttatctgatagaggattaaattggttttgcttttgtctttctactatagCTATTGGAGACAGTCGTAAAAAACTGTGGAGATATTGTCCATATGCATGTAGCAGAGAGAGATATTCTTCATGAGATGGTGAAAATAGTAAAGAAAAAG
atctgat putative branch site (score: 4)
ttttgcttttgtcttt putative PPT
attaaattggtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttcagttgtagatttcattcaatcaattgttgcattctcctgcttgcctttatctgatagaggattaaattggttttgcttttgtctttctactatagCTATTGGAGACAGTCGTAAAAAACTGTGGAGATATTGTCCATATGCATGTAGCAGAGAGAGATATTCTTCATGAGATGGTGAAAATAGTAAAGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
ccttcag
- - - - - - - - -cattcaa
- - - - - - - - - - - - - - - - -gcattct
- - - - - - - - - - - - - - - - - - - - - - cttgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatag