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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactcccaatccccatatttcttgattcttaagcatttcaatcactctgagatttgccttaatgattttttgacctataactgcagATGTTAATGCAATTGGAAATGGCTTAGGGCAATTTTTATCCTTTCGCCATCCCAAATCAG

Basic information

species Vitis vinifera
transcript Vv04s0008g03180.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71856752|gb|DT005807.1|DT005807
EST:     CATGGCCTGGTCGGAAGGAGTTGAGGAAACTCGTCTTCTCATTGCGCCGG                         ATGTTAATGCAATTGGAAATGGCTTAGGGCAATTTTTATCCCTTCGCCATC
genomic: CATGGCCTGGTCGGAAGGAGTTGAGGAAACTCGTCTTCTCATTGCGCCGGgtaactccca ... ataactgcagATGTTAATGCAATTGGAAATGGCTTAGGGCAATTTTTATCCTTTCGCCATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcatttcaatcactctgagatttgccttaatgattttttgacctataactgcagATGTTAATGCAATTGGAAATGGCTTAGGGCAATTTTTATCCTTTCGCCATCCCAAATCAG
                                           ctataac  putative branch site (score: 3)
                           ttaatgattttttga  TA-rich tract