Sequence
atgc intronic sequence ATGC exonic sequence...gttacttgttacgtatttagatgttttaatgtcatttttatattttccttgtctggaaagaagatttaagttttagtcattcttctttggaaacatgtagGTGCTCAAAATGCGGAAAAGATTCTGAAGCTTCCTCGAATATGGAAGATTTTTATGAACTGGAGTTGAATGTCAAGGGTTTGAAAAGTTTAGACGAGAGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g03170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G07920.2 (Glycine max), 3'ss of exon 2
gttacttgttacgt-atttagatgttttaat-gtcatttttatattttccttgtctggaaagaagatttaagttttagtcattcttctttggaaacatgtagGTGCTCAAAATGCGGAAAAGATTCTGAAGCTTCCTCGAATATGGAAGATTTTTATGAACTGGAGTTGAATGTCAAGGGTTTGAAAAGTTTAGACGAGAGT
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atatgctttcatgttaaatgtatgtttaaccagtagtggccatgttaatgagttatggctcatgactatgactctta--taattcaatgacttattatgcagGTGCTCAAAATGTGGAAGAGACTCTGAAGCTTCTTCCAAAATGGAAGATTTCTATGAATTGGAGTTGAATGTCAAAGGATTGAAAAGTTTAGATGGGAGC
upper sequence: Vv04s0008g03170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G07850.2 (Glycine max), 3'ss of exon 4
gttacttgttacgtatttagatgttttaatgtcatttttat-attttccttgtctggaaagaagatttaagttttagtcattcttctttgga--aacatgtagGTGCTCAAAATGCGGAAAAGATTCTGAAGCTTCCTCGAATATGGAAGATTTTTATGAACTGGAGTTGAATGTCAAGGGTTTGAAAAGTTTAGACGAGAGT
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--tgttaaatgtatgttt-gaccagtagtggccatgtttaagaattatggcttatgactatgactgttacatatttcttataatttagtgaattattatgcagGTGCTCACAATGTGGAAGAGACTCTGAAGCTTCTTCCAAAATGGAAGATTTCTATGAATTGGAGTTGAATGTCAAAGGATTGAAAAGTTTAGATGAGAGC
upper sequence: Vv04s0008g03170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G49600.1 (Arabidopsis thaliana), 3'ss of exon 3
------------------------------------------------------gttacttgttacgtatttagatgttttaatgtcat----ttttatattttccttgtctggaaagaagatttaagttttagtcattcttctttggaaacatgtagGTGCTCAAAATGCGGAAAAGATTCTGAAGCTTCCTCGAATATGGAAGATTTTTATGAACTGGAGTTGAATGTCAAGGGTTTGAAAAGTTTAGACGAGAGT
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gtaagattgagattattttttattcaagaagatttaaatggctttaaggcacatctgagttacta-atgtgcaaatgtgatga-atcatgaaatgacaaatcatatctgttcttttggt-gtcatggtcatctgttgattttgtttattgtcttgtagGTGCTCAAAATGTGGGAGGGATTCCGAAGCTTCGTCAAAGATGGAGGATTTTTATGCCCTTGAGTTGAATGTTAAGGGCCTCAAATCGTTGGATGCTAGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tccttgtctggaaagaagatttaagttttagtcattcttctttggaaacatgtagGTGCTCAAAATGCGGAAAAGATTCTGAAGCTTCCTCGAATATGGAAGATTTTTATGAACTGGAGTTGAATGTCAAGGGTTTGAAAAGTTTAGACGAGAGT
aagatttaagtttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttacttgttacgtatttagatgttttaatgtcatttttatattttccttgtctggaaagaagatttaagttttagtcattcttctttggaaacatgtagGTGCTCAAAATGCGGAAAAGATTCTGAAGCTTCCTCGAATATGGAAGATTTTTATGAACTGGAGTTGAATGTCAAGGGTTTGAAAAGTTTAGACGAGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtcattc