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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaaggatttgtctcattcgtttgtcttatgcaatgaatatgatttttggggctaccgatctaatatctacctagcgaataaagactctttatctgatctaatcagGTGTATGCACATAAAGAAACTTGTAGTGAGGAGCTGAATGTCGAGCGACTGGTTAGAAATGGTCTGCGACAAGTGGTGTTGCCACCATCTCCTGGGCAAT

Basic information

species Vitis vinifera
transcript Vv04s0008g02670.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g02670.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G07870.2 (Glycine max), 3'ss of exon 2
gttaaggatttgtctcattcgtttgtcttatgcaatgaatatgatttttggggctaccgatctaatatctacctagcgaataaagactctttatctgatctaatcagGTGTATGCACATAAAGAAACTTGTAGTGAGGAGCTGAATGTCGAGCGACTGGTTAGAAATGGTCTGCGACAAGTGGTGTTGCCACCATCTCCTGGGCAAT-
  ||||  ||||  |   | || ||  ||    |||  ||   ||||   ||          | |    |   ||  ||||| | | |  |||             |||||||||||| ||||||||||| ||||||||||||||||| ||  |  | || |  |  |||||   |||||| |||    |||| |     |  || | 
-gtaagtctttgaatttctagtctgatttca--aattgatggaatttcatgg---------ttgaagcttcattaatgaatataaaattgtta-------------gGTGTATGCACAGAAAGAAACTTGCAGTGAGGAGCTGAATGTTGAAAGGTTAGTCATGAGAGGTCTTAAACAAGTTGTGACATCACC-TGAGGAGTCCAGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctaccgatctaatatctacctagcgaataaagactctttatctgatctaatcagGTGTATGCACATAAAGAAACTTGTAGTGAGGAGCTGAATGTCGAGCGACTGGTTAGAAATGGTCTGCGACAAGTGGTGTTGCCACCATCTCCTGGGCAAT
       atctaatat  TA-rich tract