1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtcaaatagcattgctgtttagcctttacaaaaagatttcatcttgatttgcttttattgttttgtttaaaggttttatttatcttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCAATGGCTGGTGCAATCTAACAACCTCTTGACAGCTGCTGCTACACTTTC
species | Vitis vinifera |
transcript | Vv04s0008g02290.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCCEST: gi|22009632|gb|BQ794666.1|BQ794666
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACC-TTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCEST: gi|161713609|gb|FC063419.1|FC063419
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCEST: gi|110359196|gb|EC920296.1|EC920296
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCEST: gi|110720159|gb|EE095835.1|EE095835
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCCEST: gi|110719678|gb|EE095026.1|EE095026
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCCEST: gi|110723887|gb|EE099235.1|EE099235
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCCEST: gi|351027748|gb|FQ446915.1|FQ446915
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGCCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCEST: gi|110712068|gb|EE089269.1|EE089269
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCCEST: gi|22009633|gb|BQ794667.1|BQ794667
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCT-TCTGAAGC-TCGGAAACAACAGAAAATA-GGCTAATAGAG GATACC-TTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCEST: gi|33402318|gb|CF207945.1|CF207945
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: CAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCEST: gi|110713425|gb|EE089336.1|EE089336
genomic: CAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCCEST: gi|110720612|gb|EE096687.1|EE096687
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCCEST: gi|110710869|gb|EE087414.1|EE087414
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCCEST: gi|349830496|gb|FQ416794.1|FQ416794
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCEST: gi|110409640|gb|EC975307.1|EC975307
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCEST: gi|33402240|gb|CF207867.1|CF207867
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCEST: gi|349823913|gb|FQ415324.1|FQ415324
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCEST: gi|110713275|gb|EE089053.1|EE089053
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCCEST: gi|110375238|gb|EC940205.1|EC940205
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCEST: gi|30302702|gb|CB979496.1|CB979496
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCEST: gi|110699234|gb|EE076052.1|EE076052
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCCEST: gi|294966281|gb|GW837532.1|GW837532
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCEST: gi|349825321|gb|FQ418053.1|FQ418053
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCEST: gi|110718678|gb|EE095783.1|EE095783
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCCGAGCCTCCAAGACCCCEST: gi|22009328|gb|BQ794362.1|BQ794362
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: GAG-ATTTGTTTGAAGCTTCGGAAACAACAG-AAATAGGGGCT-ATAGA- GATACCTTTTCGAGGGACATCTCACTGTGGACT-CTGAGCCTCCAAGACCCEST: gi|22009660|gb|BQ794694.1|BQ794694
genomic: GAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATA-GGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGA-TCCTGAGCCTCCAAGACCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCEST: gi|349823912|gb|FQ415323.1|FQ415323
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCEST: gi|110398241|gb|EC964460.1|EC964460
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCEST: gi|352794437|gb|FQ481668.1|FQ481668
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCEST: gi|351037479|gb|FQ460678.1|FQ460678
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCEST: gi|352763367|gb|FQ471679.1|FQ471679
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCEST: gi|351038146|gb|FQ465263.1|FQ465263
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
EST: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAG GATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
genomic: AGAGAATCTGTCTGAAGCTTCGGAAACAACAGAAAATAGGGCTAATAGAGgtcaaatagc ... ttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCC
catcttgatttgcttttattgttttgtttaaaggttttatttatcttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCAATGGCTGGTGCAATCTAACAACCTCTTGACAGCTGCTGCTACACTTTC
tcttgat putative branch site (score: 4)
ttttatttatctttt putative PPT
ttttattgttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaaatagcattgctgtttagcctttacaaaaagatttcatcttgatttgcttttattgttttgtttaaaggttttatttatcttttgattagGATACCTTTTCGAGGGACATCTCACTGTGGATCCTGAGCCTCCAAGACCCCAATGGCTGGTGCAATCTAACAACCTCTTGACAGCTGCTGCTACACTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT