Sequence
atgc intronic sequence ATGC exonic sequence...taaaaacaatttcctatttaaactaattttaaaagcagttttagttttttaattcattattttcctgatatgttattcatattgtgggtaaaatatatagGATATTCTGCTGCCTTGCCATGGTCAGCCAGGATGAAGATCCTGTTCGGAGCAGCCAAGGGCCTGGCCTTCCTCCATGAAGGAGACAAGCCAGTAATATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g02070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G33470.1 (Glycine max), 3'ss of exon 2
---taaaaacaatttcctatttaaactaattttaaaagcagttttagttttttaattcattattttcctgatatgttattcatattgtgggtaaaatatatagGATATTCTGCTGCCTTGCCATGGTCAGCCAGGATGAAGATCCTGTTCGGAGCAGCCAAGGGCCTGGCCTTCCTCCATGAAGGAGACAAGCCAGTAATATA
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ggatactgatgagtgattacaaaaattactaactgaaaaaattgga-ttcttagcttaaacaaagccttaata-acagcttcttttgttc-taatacaaacagGATACTCTGCTGCCATGCCATGGTCAACCAGGATGAAAATTGCATTAGGAGCAGCCAAAGGTCTTGCCTTCCTTCATGAAGCAGATAAGCCTGTAATATA
upper sequence: Vv04s0008g02070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G05990.1 (Glycine max), 3'ss of exon 2
-----taaaaacaatttcctatttaaactaattttaaaagcagttttagttttttaattcattattttcctgatatgttattcatattgtgggtaaaatatatagGATATTCTGCTGCCTTGCCATGGTCAGCCAGGATGAAGATCCTGTTCGGAGCAGCCAAGGGCCTGGCCTTCCTCCATGAAGGAGACAAGCCAGTAATATA
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tattttgagaagaatatatcacctaaat--atttggaaattaaattcttaccaatagtataaagtataaattaagccttaa--gttttgtta-taatacaagcagGATACTCTGCTGCCTTACCATGGTCAACCAGGATGAAGATTGCATTGGGTGCAGCCAAGGGTCTCGCCTTCCTACATGAAGCAGATAAACCTGTGATATA
upper sequence: Vv04s0008g02070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G05980.1 (Glycine max), 3'ss of exon 2
-----taaaaacaatttcctatttaaactaattttaaaagcagttttagttttttaattcattattttcctgatatgttattcatattgtgggtaaaatatatagGATATTCTGCTGCCTTGCCATGGTCAGCCAGGATGAAGATCCTGTTCGGAGCAGCCAAGGGCCTGGCCTTCCTCCATGAAGGAGACAAGCCAGTAATATA
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tatattgcgaagaatatctcacataaat--atttggaaattaaattc--ttgccaatagcatgaaatacaaactaagcctcaagttttgttc-taatacaagcagGATACTCTGCTGCCTTACCATGGTCAACAAGGATGAAGATTGCATTGGGTGCAGCCAGGGGTCTGGCCTTCCTTCATGAAGCAGATAAACCTGTAATATA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttaattcattattttcctgatatgttattcatattgtgggtaaaatatatagGATATTCTGCTGCCTTGCCATGGTCAGCCAGGATGAAGATCCTGTTCGGAGCAGCCAAGGGCCTGGCCTTCCTCCATGAAGGAGACAAGCCAGTAATATA
tcctgat putative branch site (score: 3)
atatgttattcatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaaaacaatttcctatttaaactaattttaaaagcagttttagttttttaattcattattttcctgatatgttattcatattgtgggtaaaatatatagGATATTCTGCTGCCTTGCCATGGTCAGCCAGGATGAAGATCCTGTTCGGAGCAGCCAAGGGCCTGGCCTTCCTCCATGAAGGAGACAAGCCAGTAATATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- aaaacaa
- - - - - - - - - -aaactaa
- - - - - - - - - - - - - - - aaaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtggg