Sequence
atgc intronic sequence ATGC exonic sequence...gatttgatcattagtcacacacaatattatcagttagaaactgctcaaagattaaatgcatgaaattcttcaaataatgaactttttatttgatgtgcagGAACTATTACAGGTGTTCAGTTGATGGATGCAATGTGAAGAAGAGAGTTGAAAGAGATAGGGAGGATCCCAAGTATGTGATAACAACATATGAGGGCATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g01470.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G05700.1 (Glycine max), 3'ss of exon 2
gatttgatcattagtcacacacaatattatcagttagaaactgctcaaagattaaatgcatgaaattcttcaaataatgaactttt----tatttgatgtgcagGAACTATTACAGGTGTTCAGTTGATGGATGCAATGTGAAGAAGAGAGTTGAAAGAGATAGGGAGGATCCCAAGTATGTGATAACAACATATGAGGGCATC
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--tcttgtttatagaaaattggaacttcttcgcattttcacactcttaaaaataatcgcac-acttcaaacacatatttaacttgaggaacatatgat-tgtagGAACTACTATAGGTGTTCAGTGGACGGATGCCAGGTCAAAAAGAGAGTTGAAAGAGACAAGGATGATCCAAGGTATGTAATAACAACCTACGAAGGCATC
upper sequence: Vv04s0008g01470.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA14G11440.1 (Glycine max), 3'ss of exon 3
-----gatttgatcattagtcacacacaatattatcagttagaa-actgctcaaagattaaatgcatgaaattcttcaaataatgaactttttatttgatgtgcagGAACTATTACAGGTGTTCAGTTGATGGATGCAATGTGAAGAAGAGAGTTGAAAGAGATAGGGAGGATCCCAAGTATGTGATAACAACATATGAGGGCATC
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aatttaaaacaacgatgagaaagataca-tgttatatgtaaaaatagttctctttattt---ttctttttatgaataaaataac-agcatgttatttgat-tacagGAATAACTACAGGTGTTCAGTGGATGGATGCACTGTGAAAAAGAGAGTGGAGAGAGACAAGGATGACCCAAGGTATGTAATAACAACCTACGAAGGCAAC
upper sequence: Vv04s0008g01470.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G34210.1 (Glycine max), 3'ss of exon 4
----gatttgatcattagtcacac-acaatattatcagttagaaactgctcaaagattaaatgcatgaaattcttcaaataatgaactttttatttgatgtgcagGAACTATTACAGGTGTTCAGTTGATGGATGCAATGTGAAGAAGAGAGTTGAAAGAGATAGGGAGGATCCCAAGTATGTGATAACAACATATGAGGGCATC
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aatgcaatatattactacttaaattaaaaccacgatacttaagaaagatgcatg--ctatatatacaggagttttc---tattttatttttctttttatgaacagGAATTACTATAGGTGTTCAGTGGATGGATGCAACGTGAAAAAGAGAGTGGAGAGAGACAAGGATGACCCAAGGTATGTAATAACAACCTACGAAGGCAAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaagattaaatgcatgaaattcttcaaataatgaactttttatttgatgtgcagGAACTATTACAGGTGTTCAGTTGATGGATGCAATGTGAAGAAGAGAGTTGAAAGAGATAGGGAGGATCCCAAGTATGTGATAACAACATATGAGGGCATC
atttgat putative branch site (score: 5)
ctttttattt CT-rich tract
aaattcttcaaataat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatttgatcattagtcacacacaatattatcagttagaaactgctcaaagattaaatgcatgaaattcttcaaataatgaactttttatttgatgtgcagGAACTATTACAGGTGTTCAGTTGATGGATGCAATGTGAAGAAGAGAGTTGAAAGAGATAGGGAGGATCCCAAGTATGTGATAACAACATATGAGGGCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - tcacaca
- - - - - - - - - - - - - - - - - - - -actgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaataa