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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttctccatatgtatctccataaatacatagactataagaatgagttagatgccatatgtatctgacttgagtgagccaacaatctataccaagctaaaaagaagaaagccagcagattttaaattcaagtgagttgatttaaagtgatcagtatatctgatgaaagttggctttgcagGGATGCAAGGTGGTCAACAATGAGAAACACCATAATATCAGTCTACCAGCAATCTCACCTAGCCAACCTGGTGCCAACCATGCAAGCATTCATTGAACCA

Basic information

species Vitis vinifera
transcript Vv04s0008g01100.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717756|gb|FC064724.1|FC064724
EST:     TCTGCCATCTCAGCATCTCCTCTCCACCAAAAGGGTCTCTTCTTCACCAG                         GGATGCAAGGTGGTCAACAATGAGAAACACTATAATATCAGTCTACCAGCA
genomic: TCTGCCATCTCAGCATCCCCTCTCCACCAAAAGGGTCTCTTCTTCACCAGgtatttctcc ... ggctttgcagGGATGCAAGGTGGTCAACAATGAGAAACACCATAATATCAGTCTACCAGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaagtgagttgatttaaagtgatcagtatatctgatgaaagttggctttgcagGGATGCAAGGTGGTCAACAATGAGAAACACCATAATATCAGTCTACCAGCAATCTCACCTAGCCAACCTGGTGCCAACCATGCAAGCATTCATTGAACCA
                               atctgat  putative branch site (score: 4)
          ttgatttaaa  TA-rich tract