Sequence
atgc intronic sequence ATGC exonic sequencegtaagtctgaagttattcaatttttactctttgttgttttccccaaaaatgtttttcctaacttatgcttaattgtcttcagAGGAAATGGTGCTAGTGTTCTTCGTATTGTACCCTATGCAGCCTTACATTTTATGACATATGAGCAGTACAGGAGCTGGATCTTGAACAACTGCCCTGCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g01060.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G420119_T01 (Zea mays), 3'ss of exon 2
gtaagtctgaagttattcaatttttactctttgttgtt--ttccccaaaaatgtttttcctaacttatgcttaattgtc-ttcagAGGAAATGGTGCTAGTGTTCTTCGTATTGTACCCTATGCAGCCTTACATTTTATGACATATGAGCAGTACAGGAGCTGGATCTTGAACAACTGCCCTGCC
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gtgagtagcatggcagaaatgcctcaggcttttttactgctgaattaagtatattgatctcaatccactgttattggccatgcagAGGGAACGGTGCAAGCGTGCTTCGGATTGTTCCATATGCAGCATTGCATTACATGACATATGAGCAGTATAGGTGCTGGATATTGAATAATTCTGCTTCA
upper sequence: Vv04s0008g01060.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G145019_T01 (Zea mays), 3'ss of exon 2
-------gtaagtctgaagttattcaatttttact----ctttgttgttttccccaaaaatgtttttcctaacttatgctta-attgtcttcagAGGAAATGGTGCTAGTGTTCTTCGTATTGTACCCTATGCAGCCTTACATTTTATGACATATGAGCAGTACAGGAGCTGGATCTTGAACAACTGCCCTGCC
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gtatgtagcaatttgaatattgcattatttgcactgaatcatcaagattaggatataatattgattactaaccttgtattgatgctaccttcagAGGAAATGGTGCCAGTGTGATGAGAATTGTTCCTTATGCTGCATTACATTTCATGGCATATGAGCGGTACCGGTGTTGGATTTTGAATAACTGTCCCTCA
upper sequence: Vv04s0008g01060.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G05550.1 (Glycine max), 3'ss of exon 2
gtaagtctgaagttattca-atttttactctttg---------ttgttt-tccccaaaaatgtttttcctaacttatgctta------attgtcttcagAGGAAATGGTGCTAGTGTTCTTCGTATTGTACCCTATGCAGCCTTACATTTTATGACATATGAGCAGTACAGGAGCTGGATCTTGAACAACTGCCCTGCC
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gtaagactcaaatttctaggatttttatcctgtaaatttaatattatttattcttcatatctcttttgttaacctgtgtttatgtggtggtggtttcagGGGAAATGGAGCTAGTGTTATCCGCATTGTTCCGTATGCAGCCTTGCATTTTATGACATATGAGCGCTACAAAAGTTGGATCTTGAATAATTATCCTGTG
upper sequence: Vv04s0008g01060.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G05530.1 (Glycine max), 3'ss of exon 2
gtaagtctgaagttattcaa--------tttttactctttgttgttttccccaaaaatgt-ttttcctaacttatgctta---attgtcttcagAGGAAATGGTGCTAGTGTTCTTCGTATTGTACCCTATGCAGCCTTACATTTTATGACATATGAGCAGTACAGGAGCTGGATCTTGAACAACTGCCCTGCC
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gtaagactcaaatcacataacagggttcttcccccccccccccccccccccccccaccatatattgttaatctgtgtttatgtggtggtgtcagGGGAAATGGAGCTAGTGTTATCCGCATTGTTCCATATGCAGCCTTGCATTTTATGACATATGAGCGCTACAAAAGTTGGATCTTGAATAATTATCCTGCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctttgttgttttccccaaaaatgtttttcctaacttatgcttaattgtcttcagAGGAAATGGTGCTAGTGTTCTTCGTATTGTACCCTATGCAGCCTTACATTTTATGACATATGAGCAGTACAGGAGCTGGATCTTGAACAACTGCCCTGCC
ttgtcttc CT-rich tract
aaaaatgttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtctgaagttattcaatttttactctttgttgttttccccaaaaatgtttttcctaacttatgcttaattgtcttcagAGGAAATGGTGCTAGTGTTCTTCGTATTGTACCCTATGCAGCCTTACATTTTATGACATATGAGCAGTACAGGAGCTGGATCTTGAACAACTGCCCTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA