1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgcatcataaatcactgcctgatttttattgttatttatgttttgagccaccttcatggaaaaatgaaaagctgaaagttggatctaactttcttggtagGTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCAAGGGGCTTGATGTAATTCAGCAAGCACAGTCTGGAACTGGAAAAACAGC
species | Vitis vinifera |
transcript | Vv04s0008g01000.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGATGCAATGGGGTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATACG GTTTTGGGAAGCCCTCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCAEST: gi|351016486|gb|FQ423913.1|FQ423913
genomic: TGATGCAATGGGGTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATACGgtagtttacc ... ttcttggtagGTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCA
EST: TGATGCAATGGGGTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATACG GTTTTGAGAAGCCCTCCGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCAEST: gi|349823870|gb|FQ415281.1|FQ415281
genomic: TGATGCAATGGGGTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATACGgtagtttacc ... ttcttggtagGTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCA
EST: TGATGCAATGGGGTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATACG GTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCAEST: gi|349823871|gb|FQ415282.1|FQ415282
genomic: TGATGCAATGGGGTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATACGgtagtttacc ... ttcttggtagGTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCA
EST: TGATGCAATGGGGTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATACG GTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCAEST: gi|351025975|gb|FQ427987.1|FQ427987
genomic: TGATGCAATGGGGTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATACGgtagtttacc ... ttcttggtagGTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCA
EST: TGATGCAATGGGGTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATACG GTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCAEST: gi|349828337|gb|FQ416290.1|FQ416290
genomic: TGATGCAATGGGGTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATACGgtagtttacc ... ttcttggtagGTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCA
EST: TGATGCAATGGGGTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATACG GTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCAEST: gi|351029240|gb|FQ435440.1|FQ435440
genomic: TGATGCAATGGGGTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATACGgtagtttacc ... ttcttggtagGTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCA
EST: TGATGCAATGGGGTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATACG GTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCAEST: gi|351015540|gb|FQ447369.1|FQ447369
genomic: TGATGCAATGGGGTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATACGgtagtttacc ... ttcttggtagGTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCA
EST: TGATGCAATGGGGTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATACG GTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCA
genomic: TGATGCAATGGGGTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATACGgtagtttacc ... ttcttggtagGTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCA
agccaccttcatggaaaaatgaaaagctgaaagttggatctaactttcttggtagGTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCAAGGGGCTTGATGTAATTCAGCAAGCACAGTCTGGAACTGGAAAAACAGC
atctaac putative branch site (score: 2)
ctttctt CT-rich tract
aaaaatgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatcataaatcactgcctgatttttattgttatttatgttttgagccaccttcatggaaaaatgaaaagctgaaagttggatctaactttcttggtagGTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCAAGGGGCTTGATGTAATTCAGCAAGCACAGTCTGGAACTGGAAAAACAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
tgcatca
- - - - - - cactgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaagc