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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgctagactgtttgcttgtttattttgttgtcagatgtatttgtgttggtttctttatgtgttgtttgtttcactttgtagCATGGTGGGAATCGAAGAGATTTAGAGATGGCGGATTATTCACCAAGCAGGCATCCTGAGTTCCACTATAAAACCGAGTTTCAGAGCCATGAACCAGAG

Basic information

species Vitis vinifera
transcript Vv04s0008g00840.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g00840.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 3'ss of exon 2
gtatgt-tgctagactgtttgcttgtttatttt---gttgtcagatgtatttgtgttggtttctt--------tatgtgttgtttgtttcactttgtagCATGGTGGGAATCGAAGAGATTTAGAGATGGCGGATTATTCACCAAGCAGGCATCCTGAGTTCCACTATAAAACCGAGTTTCAGAGCCATGAACCAGAG
|||||| |     ||||  ||    |||        |  |||| |||   |||| |||  |   |        |     |  ||| ||||  |||     |   ||    | ||| |||    ||||  |  ||||||||    |||||||||||||| || | ||| ||||| |||||||| |||||||||||||||
gtatgtatatggaactgactgtgcattttcacaaaggaagtcatatgaccttgtcttgtctcgctctgatgactgaacatattttctttctgtttcccttagAATGCCTGTAGAAAAGAGGCTGAGAAAGTTGATTATTCCGTTAGCAGGCATCCTGAATTTCGCTACAAAACTGAGTTTCAAAGCCATGAACCAGAG

upper sequence: Vv04s0008g00840.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G142334_T02 (Zea mays), 3'ss of exon 2
gtatgt-tgctagactgtttgcttgtttattttgttgtcagatgtatttgtgttggtttctttatgtgttgtttgtttcactttgtagCATGGTGGGAATCGAAGAGATTTAGAGATGGCGGATTATTCACCAAGCAGGCATCCTGAGTTCCACTATAAAACCGAGTTTCAGAGCCATGAACCAGAG
|||||| |  |  |||||   |       |       |      | | | |   | |  ||  |  | || | | || | | || |||||||     |   ||| ||||   ||||  || ||||||||    ||||||||||||||||| | ||| ||||| |||||||| |||||||| ||||||
gtatgtatattgaactgtacaccaaaggctgcaaactttttccctctgtattcagatggctaaacatattttgttttccccctt-tagCATGCCTCTA---GAAAAGATGCTGAGAAAGCTGATTATTCTATCAGCAGGCATCCTGAGTTTCGCTACAAAACTGAGTTTCAAAGCCATGAGCCAGAG

upper sequence: Vv04s0008g00840.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G164185_T02 (Zea mays), 3'ss of exon 2
gtatgt-tgctagactgtttgct----tgtttattttgttgtcagatgtatttgtgttggtttctttatgtgttgtttgtttcactttgtagCATGGTGGGAATCGAAGAGATTTAGAGATGGCGGATTATTCACCAAGCAGGCATCCTGAGTTCCACTATAAAACCGAGTTTCAGAGCCATGAACCAGAG
|||||  |  |  |||||   |     | |  |   | ||  |   ||||||    | |   |    || | ||||||||||    ||     |   ||    | ||| ||||   ||||  || ||| ||||    |||||||||||||| || | ||| ||||| |||||||| ||||| |||||||||
gtatgcatattgaactgtacaccaaagtctgcagactttttccctctgtattcagatgg--ctaaacatattttgtttgttttttcttcctttagCATGCTTGTAGAAAAGATGCTGAGAAAGCTGATCATTCTATCAGCAGGCATCCTGAATTTCGCTACAAAACTGAGTTTCAAAGCCACGAACCAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtcagatgtatttgtgttggtttctttatgtgttgtttgtttcactttgtagCATGGTGGGAATCGAAGAGATTTAGAGATGGCGGATTATTCACCAAGCAGGCATCCTGAGTTCCACTATAAAACCGAGTTTCAGAGCCATGAACCAGAG
                                          tttcacttt  CT-rich tract
                       tttctttat  TA-rich tract