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gtaaaacatggtttatttcgtggaagtgtttttgttcttgcattcagtctgcttttgcttgatcccattggtcaaatcaacgtatcagGTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAAGAGGGCTTTGGCAGCATTCCACTTAGATGGAAAGAAGTGGGGTGTCAAT
species | Vitis vinifera |
transcript | Vv04s0008g00770.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTGGTTCTTGCCTCACAAACAAGTATTCTGAGGGATTGCCTGGTAAAAG GTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTCTGTCAGAAEST: gi|32249299|gb|CD715118.1|CD715118
genomic: GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAGgtaaaacatg ... aacgtatcagGTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAA
EST: GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAG GTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAAEST: gi|161715305|gb|FC068028.1|FC068028
genomic: GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAGgtaaaacatg ... aacgtatcagGTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAA
EST: GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAG GTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAAEST: gi|32269544|gb|CD718703.1|CD718703
genomic: GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAGgtaaaacatg ... aacgtatcagGTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAA
EST: GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAG GTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAAEST: gi|110378905|gb|EC944062.1|EC944062
genomic: GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAGgtaaaacatg ... aacgtatcagGTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAA
EST: GTTGGTTCTTGCCTCACAAACAAGTATTCTGAGGGATTGCCTGGTAAAAG GTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTCTGTCAGAAEST: gi|27580664|gb|CB003359.1|CB003359
genomic: GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAGgtaaaacatg ... aacgtatcagGTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAA
EST: GTTGGTTCTTGCCTCACAAACAAGTATTCTGAGGGATTGCCTGGTAAAAG GTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTCTGTCAGAAEST: gi|71862785|gb|DT011840.1|DT011840
genomic: GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAGgtaaaacatg ... aacgtatcagGTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAA
EST: GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAG GTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAA
genomic: GTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAGgtaaaacatg ... aacgtatcagGTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAA
gttcttgcattcagtctgcttttgcttgatcccattggtcaaatcaacgtatcagGTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAAGAGGGCTTTGGCAGCATTCCACTTAGATGGAAAGAAGTGGGGTGTCAAT
gcttgat putative branch site (score: 5)
aaatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaacatggtttatttcgtggaagtgtttttgttcttgcattcagtctgcttttgcttgatcccattggtcaaatcaacgtatcagGTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAAGAGGGCTTTGGCAGCATTCCACTTAGATGGAAAGAAGTGGGGTGTCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT